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SCNpilot_expt_500_bf_scaffold_2678

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2678_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..538
DNA (537bp) protein (179aa)
C4-dicarboxylate ABC transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031DF3CD
C4-dicarboxylate transporter {ECO:0000313|EMBL:AJP71469.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sodium:dicarboxylate symporter; K11103 aerobic C4-dicarboxylate transport protein
SCNpilot_expt_500_bf_scaffold_2678_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(804..1784)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA7AA rbh
WalW protein {ECO:0000313|EMBL:KHA63973.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2678_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1822..4062)
DNA (2241bp) protein (747aa)
histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI000263164B rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP71176.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_2678_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..4704
DNA (462bp) protein (154aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E1E7BC
ArsR family transcriptional regulator {ECO:0000313|EMBL:AJP71175.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
AsnC-family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2678_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4761..5954)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D8698B rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP71174.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2678_6
unknown

Not on your lists

comp(6368..6577)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2678_7
unknown

Not on your lists

6723..7193
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2678_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..7626)
DNA (480bp) protein (160aa)
glutathione peroxidase; K00432 glutathione peroxidase [EC:1.11.1.9]
glutathione peroxidase n=1 Tax=Sphingomonas melonis RepID=UPI0003805593
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499, ECO:0000313|EMBL:AJP71423.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2678_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7623..8219)
DNA (597bp) protein (199aa)
acetyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FC0D
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29503.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_2678_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8216..8881)
DNA (666bp) protein (222aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
peptidase S26A, signal peptidase I n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA078
SCNpilot_expt_500_bf_scaffold_2678_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8878..9570)
DNA (693bp) protein (231aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphonate-transporting ATPase (EC:3.6.3.28)
ABC transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EBBDEF rbh
SCNpilot_expt_500_bf_scaffold_2678_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9563..10816)
DNA (1254bp) protein (418aa)
ABC transporter substrate-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EF785D rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJP71421.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
lipoprotein releasing system transmembrane protein LolC/E family; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_500_bf_scaffold_2678_13
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11527..11895)
DNA (369bp) protein (123aa)
membrane protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B45BF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF52819.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_2678_14
unknown

Not on your lists

12323..12829
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2678_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13110..13559)
DNA (450bp) protein (150aa)
pilus assembly protein TadE n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B35E9C
TadE-like protein
TadE-like protein {ECO:0000313|EMBL:AGH48096.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_2678_16
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13925..14749
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036AEC08
Prevent-host-death family protein {ECO:0000313|EMBL:EJL37827.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_expt_500_bf_scaffold_2678_17
unknown

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comp(14743..15099)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2678_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..18005)
DNA (2499bp) protein (833aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas elodea RepID=UPI0002632152 rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIT05747.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2678_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18254..18724
DNA (471bp) protein (157aa)
heat-shock protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000363624B
Heat-shock protein {ECO:0000313|EMBL:AJP71419.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ibpA; molecular chaperone IbpA; K04080 molecular chaperone IbpA
SCNpilot_expt_500_bf_scaffold_2678_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19068..20336)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003127C23 rbh
Chemotaxis protein {ECO:0000313|EMBL:AJP74143.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
methyl-accepting chemotaxis sensory transducer rbh
SCNpilot_expt_500_bf_scaffold_2678_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20306..20869)
DNA (564bp) protein (188aa)
methyl-accepting chemotaxis protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E111
Chemotaxis protein {ECO:0000313|EMBL:AJP71063.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_expt_500_bf_scaffold_2678_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21070..21783)
DNA (714bp) protein (238aa)
peptidylprolyl isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036ECED4
Peptidylprolyl isomerase {ECO:0000313|EMBL:AJP71746.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_500_bf_scaffold_2678_23
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21814..22377)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD05B4
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2678_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22561..24195)
DNA (1635bp) protein (545aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pyrG; CTP synthetase (EC:6.3.4.2) rbh
CTP synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D92576 rbh
SCNpilot_expt_500_bf_scaffold_2678_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24303..24695)
DNA (393bp) protein (131aa)
preprotein translocase subunit SecG n=1 Tax=Sphingomonas elodea RepID=UPI0002631DC1
Preprotein translocase subunit SecG {ECO:0000313|EMBL:AJP71417.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
secG; protein-export membrane protein SecG; K03075 preprotein translocase subunit SecG
SCNpilot_expt_500_bf_scaffold_2678_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24902..25252
DNA (351bp) protein (117aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631DC0
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13156.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
regulatory protein MarR
SCNpilot_expt_500_bf_scaffold_2678_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25371..25565
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002882E79
Uncharacterized protein {ECO:0000313|EMBL:AJP71416.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2678_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25562..26503
DNA (942bp) protein (314aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031E1A4E rbh
SCNpilot_expt_500_bf_scaffold_2678_29
unknown

Not on your lists

comp(26500..27096)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2678_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27423..28340
DNA (918bp) protein (306aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
glucose 6-phosphate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036530BD
Displaying items 1-30 of 57 in total

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