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SCNpilot_expt_500_bf_scaffold_3240

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3240_1
unknown

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342..890
DNA (549bp) protein (183aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3240_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1011..2195)
DNA (1185bp) protein (395aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12358.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3240_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2352..2564)
DNA (213bp) protein (71aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hppA; membrane-bound proton-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX90_PARL1
SCNpilot_expt_500_bf_scaffold_3240_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2588..4339)
DNA (1752bp) protein (584aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rrpP; H+ translocating pyrophosphate synthase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Oceanibaculum indicum P24 RepID=K2KK41_9PROT
SCNpilot_expt_500_bf_scaffold_3240_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4596..4709)
DNA (114bp) protein (38aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13166.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3240_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5624..6199)
DNA (576bp) protein (192aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AN26_AZOBR
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
coxG; cytochrome c oxidase assembly protein
SCNpilot_expt_500_bf_scaffold_3240_7
unknown

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comp(6200..6331)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3240_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6328..7236)
DNA (909bp) protein (303aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
protoheme IX farnesyltransferase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BSW4_PUNMI
SCNpilot_expt_500_bf_scaffold_3240_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7240..8811)
DNA (1572bp) protein (524aa)
cytochrome c oxidase subunit I (EC:1.9.3.1) rbh
Cytochrome C oxidase subunit I n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KTX6_9PROT rbh
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:AIL12353.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_3240_10
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8835..9470)
DNA (636bp) protein (212aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Cytochrome c oxidase subunit 2 n=1 Tax=Oceanibaculum indicum P24 RepID=K2KEP6_9PROT
coxB; cytochrome c oxidase, subunit II
SCNpilot_expt_500_bf_scaffold_3240_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9677..11347)
DNA (1671bp) protein (557aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12352.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Diguanylate cyclase/phosphodiesterase id=3710565 bin=GWC2_Alphaproteobacteria_42_16 species=Kangiella koreensis genus=Kangiella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3240_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11373..12134
DNA (762bp) protein (254aa)
DNA repair protein radc n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNV7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AIL12351.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_500_bf_scaffold_3240_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12131..12694)
DNA (564bp) protein (188aa)
Putative oxygen-independent coproporphyrinogen III oxidase (HemN-like) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGG2_AZOBR
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:AIL12350.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative oxygen-independent coproporphyrinogen III oxidase (hemN-like)
Displaying 13 items

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