ggKbase home page

SCNpilot_expt_500_bf_scaffold_5569

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5569_1
unknown

Not on your lists

2..73
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5569_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81..332)
DNA (252bp) protein (84aa)
Rho termination factor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC86
Uncharacterized protein {ECO:0000313|EMBL:GAM01342.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5569_3
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

454..1911
DNA (1458bp) protein (486aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
amidophosphoribosyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375E944 rbh
SCNpilot_expt_500_bf_scaffold_5569_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1926..2642
DNA (717bp) protein (239aa)
oxidoreductase n=1 Tax=Sphingomonas melonis RepID=UPI00037778B5 rbh
Oxidoreductase {ECO:0000313|EMBL:AIT05446.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SDR-family protein
SCNpilot_expt_500_bf_scaffold_5569_5
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2688..3233
DNA (546bp) protein (182aa)
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDF7_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_5569_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3239..3727
DNA (489bp) protein (163aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
gamma-glutamyl kinase (EC:2.7.2.11)
glutamate 5-kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B79AC6
SCNpilot_expt_500_bf_scaffold_5569_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3724..4620
DNA (897bp) protein (299aa)
epimerase n=1 Tax=Sphingomonas elodea RepID=UPI000263107D
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AGH51175.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_5569_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4677..5306)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B9_GEMAT
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:CDM65452.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5569_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5430..6053)
DNA (624bp) protein (208aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
ketohydroxyglutarate aldolase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA087 rbh
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:GAL99506.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_5569_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6053..7018)
DNA (966bp) protein (322aa)
Glucokinase {ECO:0000313|EMBL:EZP57004.1}; EC=2.7.1.2 {ECO:0000313|EMBL:EZP57004.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
Glucokinase n=1 Tax=Sphingomonas sp. S17 RepID=F3WSE3_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_5569_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7006..8640)
DNA (1635bp) protein (545aa)
phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12]
phosphogluconate dehydratase n=1 Tax=Sphingomonas melonis RepID=UPI00037646F4
Phosphogluconate dehydratase {ECO:0000313|EMBL:AIT05756.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_5569_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8650..9357)
DNA (708bp) protein (236aa)
6-phosphogluconolactonase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373E44E rbh
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29272.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
6-phosphogluconolactonase
SCNpilot_expt_500_bf_scaffold_5569_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9394..10857)
DNA (1464bp) protein (488aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] rbh
glucose-6-phosphate 1-dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI0003761AB8 rbh
SCNpilot_expt_500_bf_scaffold_5569_14
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10873..11790)
DNA (918bp) protein (306aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
N-acetyl-gamma-glutamyl-phosphate reductase; K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C567_9SPHN
SCNpilot_expt_500_bf_scaffold_5569_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11787..12086)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6249D
Uncharacterized protein {ECO:0000313|EMBL:EZP57009.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
NLP/P60 protein
SCNpilot_expt_500_bf_scaffold_5569_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12049..12420)
DNA (372bp) protein (124aa)
transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5C0C6
MarR family transcriptional regulator {ECO:0000313|EMBL:KHA64934.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
regulatory protein MarR
SCNpilot_expt_500_bf_scaffold_5569_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12624..12983
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003697006
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KHA64933.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
preprotein translocase subunit SecG
SCNpilot_expt_500_bf_scaffold_5569_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13072..13902
DNA (831bp) protein (277aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2]
CTP synthetase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA07E
SCNpilot_expt_500_bf_scaffold_5569_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13920..14687
DNA (768bp) protein (256aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
CTP synthase n=1 Tax=Sphingomonas sp. S17 RepID=F3WSF1_9SPHN
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5569_20
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14717..15394
DNA (678bp) protein (226aa)
transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5CF rbh
Putative two-component response regulator {ECO:0000313|EMBL:GAM02274.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_500_bf_scaffold_5569_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15384..16733
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
HAMP domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ5_9SPHN rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_5569_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16873..17508
DNA (636bp) protein (212aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ6_9SPHN
Putative transporter {ECO:0000313|EMBL:GAM02276.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
cation/multidrug efflux pump
SCNpilot_expt_500_bf_scaffold_5569_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17534..19057
DNA (1524bp) protein (508aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ6_9SPHN
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14346.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
acriflavin resistance protein
SCNpilot_expt_500_bf_scaffold_5569_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19014..19928
DNA (915bp) protein (305aa)
RND transporter n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037B366D
Cobalt-zinc-cadmium resistance protein czcA {ECO:0000313|EMBL:GAO53008.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acriflavin resistance protein
SCNpilot_expt_500_bf_scaffold_5569_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19921..20964
DNA (1044bp) protein (348aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ7_9SPHN rbh
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14345.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
efflux transporter, RND family, MFP subunit
Displaying 25 items

View Taxonomy