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SCNpilot_expt_500_bf_scaffold_4113

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4113_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..228)
DNA (228bp) protein (76aa)
UPI0003CDD36F related cluster n=1 Tax=unknown RepID=UPI0003CDD36F
2-oxo-3-deoxygalactonate 6-phosphate aldolase {ECO:0000313|EMBL:KKB11963.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase
SCNpilot_expt_500_bf_scaffold_4113_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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352..1269
DNA (918bp) protein (306aa)
Sugar ABC transporter permease n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGR8_9RHOB rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB11982.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
CUT1 family carbohydrate ABC transporter membrane protein 1; K02025 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_4113_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1266..2108
DNA (843bp) protein (281aa)
Sugar transport permease BglB n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGR7_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11964.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport system inner membrane protein; K10190 lactose/L-arabinose transport system permease protein
SCNpilot_expt_500_bf_scaffold_4113_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2101..2571)
DNA (471bp) protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11983.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_500_bf_scaffold_4113_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2729..3358
DNA (630bp) protein (210aa)
Sugar transport system (Sugar-binding protein) n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGR6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB11965.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar ABC transporter substrate-binding protein; K10188 lactose/L-arabinose transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_4113_6
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3429..6134
DNA (2706bp) protein (902aa)
Putative beta-galactosidase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGR5_9RHOB rbh
Putative beta-galactosidase {ECO:0000313|EMBL:EAR51870.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
beta-galactosidase rbh
SCNpilot_expt_500_bf_scaffold_4113_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6131..7192
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGR4_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11966.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar ABC transporter ATP-binding protein
SCNpilot_expt_500_bf_scaffold_4113_8
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7279..7902
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EA78_BRASB
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ABQ33072.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_500_bf_scaffold_4113_9
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7899..8987
DNA (1089bp) protein (363aa)
HlyD family secretion protein n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MCC6_PSEPS
HlyD family secretion protein {ECO:0000313|EMBL:ELS24140.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_500_bf_scaffold_4113_10
Cronobacter dublinensis, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9026..10246)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Cronobacter dublinensis 582 RepID=K8BH45_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CCJ85390.1}; TaxID=1208661 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter dublinensis 582.;"
SCNpilot_expt_500_bf_scaffold_4113_11
unknown

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comp(10418..10759)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4113_12
unknown

Not on your lists

comp(10799..11005)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4113_13
unknown

Not on your lists

comp(11021..11353)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4113_14
unknown

Not on your lists

comp(11500..12003)
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4113_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12725..14233
DNA (1509bp) protein (503aa)
MFS transporter n=1 Tax=Thauera terpenica 58Eu RepID=S9ZLD2_9RHOO rbh
MFS transporter {ECO:0000313|EMBL:KJB93191.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
major facilitator superfamily protein; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA rbh
SCNpilot_expt_500_bf_scaffold_4113_16
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14481..15551
DNA (1071bp) protein (357aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FEP5_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX70035.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ABC-type sugar transport system, periplasmic component
SCNpilot_expt_500_bf_scaffold_4113_17
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15765..16067
DNA (303bp) protein (101aa)
Sugar ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FES8_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:ESX70033.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
sugar ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_expt_500_bf_scaffold_4113_18
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16036..16557
DNA (522bp) protein (174aa)
ABC transporter,permease,likely transports tagatose n=1 Tax=Sinorhizobium meliloti 2011 RepID=M4MLE5_RHIML
ABC transporter,permease,likely transports tagatose
ABC transporter,permease,likely transports tagatose {ECO:0000313|EMBL:AGG70945.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_expt_500_bf_scaffold_4113_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16577..17851
DNA (1275bp) protein (425aa)
Sugar ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJT0_AGRRK rbh
sugar ABC transporter rbh
Sugar ABC transporter {ECO:0000313|EMBL:ACM30172.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_500_bf_scaffold_4113_20
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17812..18777
DNA (966bp) protein (322aa)
lacZ1; beta-D-galactosidase; K12308 beta-galactosidase [EC:3.2.1.23]
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B682F8
Beta-galactosidase {ECO:0000313|EMBL:EJZ18000.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_500_bf_scaffold_4113_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18843..19553)
DNA (711bp) protein (237aa)
Transcriptional regulator, AraC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1X3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB07038.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
AraC family transcriptional regulator; K02855 AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
Displaying 21 items

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