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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 51-100 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_expt_500_p_scaffold_491 64 55730 bp 33.81 111.29 43.76
SCNpilot_expt_500_p_scaffold_1700 63 55053 bp 32.64 111.87 54.33
SCNpilot_expt_500_p_scaffold_399 63 51469 bp 33.21 111.49 54.66
SCNpilot_expt_500_p_scaffold_439 62 47138 bp 32.27 111.13 62.25
SCNpilot_expt_500_p_scaffold_1553 62 47459 bp 33.87 110.49 52.86
SCNpilot_expt_500_p_scaffold_732 62 60035 bp 32.68 112.62 50.08
SCNpilot_expt_500_p_scaffold_2023 62 51790 bp 31.50 110.11 45.98
SCNpilot_expt_500_p_scaffold_578 62 53939 bp 35.23 110.13 56.02
SCNpilot_expt_500_p_scaffold_433 61 54305 bp 31.94 110.61 42.35
SCNpilot_expt_500_p_scaffold_1032 61 53077 bp 33.71 112.37 52.44
SCNpilot_expt_500_p_scaffold_2038 61 54019 bp 32.25 108.01 52.85
SCNpilot_expt_500_p_scaffold_844 61 50291 bp 33.64 110.24 49.56
SCNpilot_expt_500_p_scaffold_927 60 48891 bp 33.90 110.83 63.08
SCNpilot_expt_500_p_scaffold_1037 60 42745 bp 34.44 113.58 52.69
SCNpilot_expt_500_p_scaffold_1055 60 48402 bp 32.31 113.06 36.52
SCNpilot_expt_500_p_scaffold_541 60 62748 bp 33.89 110.35 72.60
SCNpilot_expt_500_p_scaffold_801 60 67075 bp 34.26 108.81 62.42
SCNpilot_expt_500_p_scaffold_558 59 39071 bp 33.20 109.80 49.56
SCNpilot_expt_500_p_scaffold_620 59 41884 bp 32.11 108.15 48.49
SCNpilot_expt_500_p_scaffold_1247 59 38302 bp 33.90 113.51 52.62
SCNpilot_expt_500_p_scaffold_1275 58 45906 bp 32.92 112.74 59.48
SCNpilot_expt_500_p_scaffold_2767 58 45833 bp 32.79 111.35 46.57
SCNpilot_expt_500_p_scaffold_518 58 44876 bp 33.34 112.84 49.76
SCNpilot_expt_500_p_scaffold_797 58 46117 bp 32.86 109.16 46.02
SCNpilot_expt_500_p_scaffold_1150 58 39684 bp 34.55 113.41 51.76
SCNpilot_expt_500_p_scaffold_310 58 62909 bp 32.62 104.64 74.67
SCNpilot_expt_500_p_scaffold_898 58 48594 bp 33.83 108.81 63.78
SCNpilot_expt_500_p_scaffold_676 57 37571 bp 33.48 106.90 58.94
SCNpilot_expt_500_p_scaffold_697 57 42632 bp 33.40 110.99 62.43
SCNpilot_expt_500_p_scaffold_725 57 34934 bp 33.94 114.09 50.16
SCNpilot_expt_500_p_scaffold_810 57 44057 bp 33.04 111.65 56.80
SCNpilot_expt_500_p_scaffold_1154
Domain: Metazoa (52.63%)
57 46397 bp 34.91 114.77 58.19
SCNpilot_expt_500_p_scaffold_824 57 52915 bp 33.34 110.66 59.22
SCNpilot_expt_500_p_scaffold_403 57 59758 bp 32.58 109.52 70.92
SCNpilot_expt_500_p_scaffold_2293 56 39090 bp 33.67 111.74 58.10
SCNpilot_expt_500_p_scaffold_480 55 44104 bp 33.41 110.52 62.81
SCNpilot_expt_500_p_scaffold_1430 55 39733 bp 35.44 113.21 50.38
SCNpilot_expt_500_p_scaffold_841 55 55187 bp 32.78 111.20 49.82
SCNpilot_expt_500_p_scaffold_420 54 50155 bp 33.55 111.05 49.04
SCNpilot_expt_500_p_scaffold_476 54 63214 bp 32.18 49.09 76.64
SCNpilot_expt_500_p_scaffold_1137 54 32124 bp 32.76 111.66 48.83
SCNpilot_expt_500_p_scaffold_2862
Domain: Metazoa (68.52%)
54 44492 bp 35.20 111.12 59.01
SCNpilot_expt_500_p_scaffold_638 54 49011 bp 34.24 111.65 55.11
SCNpilot_expt_500_p_scaffold_1302 53 41866 bp 33.53 109.74 53.91
SCNpilot_expt_500_p_scaffold_1769 52 52902 bp 33.88 112.01 46.26
SCNpilot_expt_500_p_scaffold_680 52 51740 bp 33.40 107.63 64.95
SCNpilot_expt_500_p_scaffold_428 52 47630 bp 32.46 49.27 77.68
SCNpilot_expt_500_p_scaffold_705 52 47368 bp 33.88 111.06 46.25
SCNpilot_expt_500_p_scaffold_728 52 48224 bp 33.04 109.17 55.80
SCNpilot_expt_500_p_scaffold_1078
Domain: Metazoa (55.77%)
52 45731 bp 33.82 112.48 52.49
Displaying items 51-100 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.