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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 101-150 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_expt_500_p_scaffold_539 52 40087 bp 35.30 111.08 57.77
SCNpilot_expt_500_p_scaffold_1644 52 40997 bp 33.27 111.33 59.87
SCNpilot_expt_500_p_scaffold_804 52 48057 bp 34.35 109.86 57.02
SCNpilot_expt_500_p_scaffold_1161
Domain: Metazoa (55.77%)
52 37754 bp 32.48 110.68 57.92
SCNpilot_expt_500_p_scaffold_906 52 52966 bp 31.99 112.46 48.34
SCNpilot_expt_500_p_scaffold_1531
Domain: Metazoa (60.78%)
51 43441 bp 32.18 108.27 66.48
SCNpilot_expt_500_p_scaffold_517 51 41437 bp 33.32 110.55 49.67
SCNpilot_expt_500_p_scaffold_3501 51 36018 bp 33.15 111.33 59.05
SCNpilot_expt_500_p_scaffold_2084 51 32750 bp 31.74 112.61 55.59
SCNpilot_expt_500_p_scaffold_1254 50 43817 bp 32.85 106.75 74.65
SCNpilot_expt_500_p_scaffold_1012 50 47131 bp 32.67 111.41 40.60
SCNpilot_expt_500_p_scaffold_1536 50 45172 bp 33.78 99.70 67.78
SCNpilot_expt_500_p_scaffold_466 50 45333 bp 33.92 112.75 42.64
SCNpilot_expt_500_p_scaffold_1071 50 43784 bp 33.97 111.01 52.61
SCNpilot_expt_500_p_scaffold_598 50 37359 bp 33.26 111.07 49.25
SCNpilot_expt_500_p_scaffold_905 50 37649 bp 33.49 111.97 49.26
SCNpilot_expt_500_p_scaffold_935 49 33558 bp 32.95 115.22 45.94
SCNpilot_expt_500_p_scaffold_987 49 33449 bp 32.58 111.46 48.35
SCNpilot_expt_500_p_scaffold_536
Domain: Metazoa (61.22%)
49 43667 bp 32.74 110.62 57.56
SCNpilot_expt_500_p_scaffold_1159 49 31545 bp 32.85 111.73 47.03
SCNpilot_expt_500_p_scaffold_574 49 37906 bp 34.12 109.57 47.92
SCNpilot_expt_500_p_scaffold_473 48 48920 bp 30.98 108.86 70.11
SCNpilot_expt_500_p_scaffold_3223 48 38106 bp 32.85 113.52 46.66
SCNpilot_expt_500_p_scaffold_1375 48 38128 bp 33.26 110.81 55.51
SCNpilot_expt_500_p_scaffold_570 48 42489 bp 32.65 111.02 56.94
SCNpilot_expt_500_p_scaffold_2120 48 44265 bp 33.78 110.87 40.76
SCNpilot_expt_500_p_scaffold_1473 48 41455 bp 33.83 111.58 42.24
SCNpilot_expt_500_p_scaffold_2163 48 45530 bp 32.26 110.42 53.83
SCNpilot_expt_500_p_scaffold_1489 48 36051 bp 32.78 109.48 46.58
SCNpilot_expt_500_p_scaffold_1045 47 38633 bp 32.51 109.16 56.04
SCNpilot_expt_500_p_scaffold_1089 47 33270 bp 32.78 113.71 57.45
SCNpilot_expt_500_p_scaffold_4868 47 29489 bp 32.29 108.51 50.90
SCNpilot_expt_500_p_scaffold_778 47 45701 bp 32.85 109.62 65.62
SCNpilot_expt_500_p_scaffold_540 47 40447 bp 34.07 111.27 50.89
SCNpilot_expt_500_p_scaffold_548 47 45833 bp 32.26 110.71 59.78
SCNpilot_expt_500_p_scaffold_2112 47 41758 bp 32.29 111.68 37.46
SCNpilot_expt_500_p_scaffold_1002 46 43125 bp 34.38 110.19 47.58
SCNpilot_expt_500_p_scaffold_2216 46 35426 bp 31.41 108.59 44.13
SCNpilot_expt_500_p_scaffold_2241 46 32147 bp 33.34 112.72 47.86
SCNpilot_expt_500_p_scaffold_496 46 42802 bp 32.63 104.10 72.78
SCNpilot_expt_500_p_scaffold_774 46 34190 bp 33.13 114.17 51.17
SCNpilot_expt_500_p_scaffold_791 46 34973 bp 32.70 109.46 58.20
SCNpilot_expt_500_p_scaffold_846 46 33513 bp 33.67 111.39 64.62
SCNpilot_expt_500_p_scaffold_848 46 30168 bp 32.39 110.07 43.69
SCNpilot_expt_500_p_scaffold_597 46 36944 bp 33.79 109.97 50.85
SCNpilot_expt_500_p_scaffold_1046 45 40295 bp 33.27 113.33 51.98
SCNpilot_expt_500_p_scaffold_1596
Domain: Metazoa (53.33%)
45 37230 bp 34.18 112.68 44.36
SCNpilot_expt_500_p_scaffold_1660 45 34530 bp 32.68 111.28 51.07
SCNpilot_expt_500_p_scaffold_1683 45 31182 bp 34.70 113.41 50.30
SCNpilot_expt_500_p_scaffold_902 45 28915 bp 34.19 110.44 51.74
Displaying items 101-150 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.