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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 151-200 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_expt_500_p_scaffold_2193 45 33900 bp 33.52 112.59 44.58
SCNpilot_expt_500_p_scaffold_1508
Domain: Metazoa (53.33%)
45 29489 bp 37.10 110.84 61.06
SCNpilot_expt_500_p_scaffold_993 44 25574 bp 32.28 109.90 50.56
SCNpilot_expt_500_p_scaffold_1587 44 38871 bp 33.36 110.38 52.47
SCNpilot_expt_500_p_scaffold_2535 44 32831 bp 32.74 113.18 50.61
SCNpilot_expt_500_p_scaffold_1611 44 37710 bp 34.17 110.78 48.58
SCNpilot_expt_500_p_scaffold_3037
Domain: Metazoa (61.36%)
44 27358 bp 34.39 112.29 56.56
SCNpilot_expt_500_p_scaffold_970 43 25187 bp 32.78 111.34 55.50
SCNpilot_expt_500_p_scaffold_726 43 42666 bp 34.67 111.87 58.27
SCNpilot_expt_500_p_scaffold_1110 43 30067 bp 33.74 111.96 45.45
SCNpilot_expt_500_p_scaffold_1393 43 39017 bp 33.37 111.10 43.86
SCNpilot_expt_500_p_scaffold_1138 43 40935 bp 32.91 110.27 41.52
SCNpilot_expt_500_p_scaffold_1425 43 29257 bp 33.84 110.79 60.32
SCNpilot_expt_500_p_scaffold_587 43 41041 bp 33.97 111.73 53.75
SCNpilot_expt_500_p_scaffold_599 43 36867 bp 33.42 111.17 52.32
SCNpilot_expt_500_p_scaffold_654 43 35778 bp 32.77 112.51 48.57
SCNpilot_expt_500_p_scaffold_2247 42 25340 bp 34.01 115.13 58.07
SCNpilot_expt_500_p_scaffold_973 42 23658 bp 33.19 113.53 60.30
SCNpilot_expt_500_p_scaffold_723 42 37043 bp 33.91 111.81 58.75
SCNpilot_expt_500_p_scaffold_1090 42 30609 bp 32.22 109.93 42.04
SCNpilot_expt_500_p_scaffold_1612 42 30678 bp 31.85 108.36 40.98
SCNpilot_expt_500_p_scaffold_519 42 45128 bp 31.76 97.78 69.88
SCNpilot_expt_500_p_scaffold_3736 42 30895 bp 33.60 109.88 51.45
SCNpilot_expt_500_p_scaffold_1881
Domain: Metazoa (71.43%)
42 26271 bp 35.00 113.36 63.17
SCNpilot_expt_500_p_scaffold_2572 42 24817 bp 32.05 108.42 58.22
SCNpilot_expt_500_p_scaffold_781 42 37244 bp 33.96 110.13 48.34
SCNpilot_expt_500_p_scaffold_808 42 34300 bp 33.16 109.10 50.91
SCNpilot_expt_500_p_scaffold_830 42 27294 bp 32.56 112.79 60.56
SCNpilot_expt_500_p_scaffold_600 42 42352 bp 32.68 98.26 65.75
SCNpilot_expt_500_p_scaffold_639 42 45111 bp 31.87 110.74 73.86
SCNpilot_expt_500_p_scaffold_1021
Domain: Metazoa (63.41%)
41 37297 bp 33.15 111.28 52.23
SCNpilot_expt_500_p_scaffold_2545 41 31573 bp 33.60 114.58 50.82
SCNpilot_expt_500_p_scaffold_2061 41 26797 bp 33.78 113.58 48.31
SCNpilot_expt_500_p_scaffold_1392 41 30105 bp 33.87 114.80 47.61
SCNpilot_expt_500_p_scaffold_576 41 37875 bp 30.69 109.47 47.54
SCNpilot_expt_500_p_scaffold_632
Domain: Metazoa (51.22%)
41 38389 bp 32.66 110.49 52.43
SCNpilot_expt_500_p_scaffold_1227 41 37848 bp 34.23 111.70 44.44
SCNpilot_expt_500_p_scaffold_894 41 30702 bp 34.70 112.38 51.06
SCNpilot_expt_500_p_scaffold_2960 41 28707 bp 33.21 108.81 55.58
SCNpilot_expt_500_p_scaffold_913 41 27657 bp 34.94 110.25 46.31
SCNpilot_expt_500_p_scaffold_916 41 29442 bp 33.81 109.52 59.55
SCNpilot_expt_500_p_scaffold_1018 40 25866 bp 32.50 111.29 51.54
SCNpilot_expt_500_p_scaffold_1022 40 30097 bp 33.74 113.62 47.70
SCNpilot_expt_500_p_scaffold_1291 40 32189 bp 33.84 112.79 53.64
SCNpilot_expt_500_p_scaffold_958 40 37645 bp 33.75 109.54 69.17
SCNpilot_expt_500_p_scaffold_1295 40 25731 bp 34.18 109.00 64.11
SCNpilot_expt_500_p_scaffold_1299 40 36189 bp 32.72 108.49 48.65
SCNpilot_expt_500_p_scaffold_6191
Domain: Metazoa (62.5%)
40 19372 bp 33.88 116.48 67.50
SCNpilot_expt_500_p_scaffold_2560 40 30753 bp 33.57 110.49 53.52
SCNpilot_expt_500_p_scaffold_1105 40 22650 bp 32.20 109.17 51.23
Displaying items 151-200 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.