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scnpilot_expt_750_bf_scaffold_364

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_364_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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283..1140
DNA (858bp) protein (286aa)
Putative bacteriophage integrase n=1 Tax=Burkholderia pseudomallei (strain K96243) RepID=Q63PM9_BURPS rbh
Phage integrase family protein {ECO:0000313|EMBL:KGD54710.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;"
phage integrase family protein
scnpilot_expt_750_bf_scaffold_364_trna_1
unknown

Not on your lists

comp(1159..1230)
DNA (72bp)
transferRNA
scnpilot_expt_750_bf_scaffold_364_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1283..1873)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX78_9GAMM
putative S-adenosylmethionine-dependent methyltransferase
Putative S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AGG90584.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodano
scnpilot_expt_750_bf_scaffold_364_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1983..3377
DNA (1395bp) protein (465aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
Glutamate--tRNA ligase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=SYE_BORPD
scnpilot_expt_750_bf_scaffold_364_4
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3476..4591
DNA (1116bp) protein (372aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
chorismate synthase (EC:4.2.3.5)
chorismate synthase n=1 Tax=Caldimonas manganoxidans RepID=UPI000376FDD0
scnpilot_expt_750_bf_scaffold_364_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4594..5415
DNA (822bp) protein (274aa)
Peptidase, M48 family {ECO:0000313|EMBL:EFV95146.1}; EC=3.4.24.- {ECO:0000313|EMBL:EFV95146.1};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae;
Peptidase, M48 family n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWP2_9BURK rbh
hypothetical protein
scnpilot_expt_750_bf_scaffold_364_6
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5446..6855
DNA (1410bp) protein (470aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
isopropylmalate isomerase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E474E7 rbh
scnpilot_expt_750_bf_scaffold_364_7
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6867..7004
DNA (138bp) protein (46aa)
Putative small secreted protein {ECO:0000313|EMBL:EUJ11383.1}; Flags: Precursor;; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Meth
scnpilot_expt_750_bf_scaffold_364_8
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7012..7665
DNA (654bp) protein (218aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Herbaspirillum lusitanum RepID=UPI000382C269
scnpilot_expt_750_bf_scaffold_364_9
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7760..8824
DNA (1065bp) protein (355aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWN8_9BURK rbh
scnpilot_expt_750_bf_scaffold_364_10
Burkholderia dolosa, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8843..9964
DNA (1122bp) protein (374aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
aspartate-semialdehyde dehydrogenase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036EE734
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:M
scnpilot_expt_750_bf_scaffold_364_11
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10154..13135
DNA (2982bp) protein (994aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00036B4DC3 rbh
hypothetical protein; K08086 pilus assembly protein FimV Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_364_12
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13235..13936
DNA (702bp) protein (234aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) Tax=GWA2_Rhodocyclales_65_20_curated
tRNA pseudouridine synthase A n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIR6_AZOSU
pseudouridylate synthase I
scnpilot_expt_750_bf_scaffold_364_13

Not on your lists

13933..15183
DNA (1251bp) protein (417aa)
guanylate cyclase n=1 Tax=Nevskia ramosa RepID=UPI0003B4F7CD
Adenylate and Guanylate cyclase catalytic domain {ECO:0000313|EMBL:AGU11853.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
adenylate/guanylate cyclase
scnpilot_expt_750_bf_scaffold_364_14
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15196..18105)
DNA (2910bp) protein (970aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DLD8_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF00018.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkali
scnpilot_expt_750_bf_scaffold_364_15
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18151..18813
DNA (663bp) protein (221aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AH75_BURGB
N-(5'phosphoribosyl)anthranilate (PRA) isomerase family protein
scnpilot_expt_750_bf_scaffold_364_16
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18810..20009
DNA (1200bp) protein (400aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; B
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Ralstonia sp. PBA RepID=I9W7A2_9RALS rbh
scnpilot_expt_750_bf_scaffold_364_17
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20009..20824
DNA (816bp) protein (272aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1217418 species="
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IAD9_9BURK
scnpilot_expt_750_bf_scaffold_364_18
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20835..21704
DNA (870bp) protein (290aa)
accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AH79_BURGB rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
scnpilot_expt_750_bf_scaffold_364_19
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21712..22995
DNA (1284bp) protein (428aa)
Dihydrofolate synthase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XUF4_ALCXX
folylpolyglutamate synthase
Folylpolyglutamate synthase {ECO:0000313|EMBL:AIR51383.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter x
scnpilot_expt_750_bf_scaffold_364_20
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23073..23894
DNA (822bp) protein (274aa)
Sporulation domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XY52_LEPCP
sporulation domain-containing protein
Cell division protein DedD {ECO:0000313|EMBL:EXI67953.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.
scnpilot_expt_750_bf_scaffold_364_21
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23894..24505
DNA (612bp) protein (204aa)
Colicin V production protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7R9_NITMU
colicin V production protein; K03558 membrane protein required for colicin V production Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
colicin V production protein
scnpilot_expt_750_bf_scaffold_364_22
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24481..26013
DNA (1533bp) protein (511aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002EA4E3E
amidophosphoribosyltransferase
scnpilot_expt_750_bf_scaffold_364_23
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26075..27334
DNA (1260bp) protein (420aa)
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:EFV95130.1}; EC=4.2.99.- {ECO:0000313|EMBL:EFV95130.1};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
O-succinylhomoserine sulfhydrylase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWM6_9BURK rbh
O-succinylhomoserine sulfhydrylase
scnpilot_expt_750_bf_scaffold_364_24
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27373..31161
DNA (3789bp) protein (1263aa)
Transcriptional regulator {ECO:0000313|EMBL:KJK15099.1}; EC=1.2.1.88 {ECO:0000313|EMBL:KJK15099.1};; EC=1.5.5.2 {ECO:0000313|EMBL:KJK15099.1};; TaxID=1619952 species="Bacteria; Proteobacteria; Betapro
Transcriptional repressor of PutA and PutP (EC:1.5.5.2 1.2.1.88)
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase n=1 Tax=Cupriavidus sp. WS RepID=UPI000381F68B
scnpilot_expt_750_bf_scaffold_364_25
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31222..34446)
DNA (3225bp) protein (1075aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalob
dnaE2; DNA polymerase III subunit alpha (EC:2.7.7.7)
Error-prone DNA polymerase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W135_9BURK rbh
scnpilot_expt_750_bf_scaffold_364_26
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34531..35097)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000378D5FC
Uncharacterized protein {ECO:0000313|EMBL:EWY40953.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
hutD family protein
scnpilot_expt_750_bf_scaffold_364_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35157..35906)
DNA (750bp) protein (250aa)
transcriptional regulator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B72AB4
hypothetical protein
IclR family transcriptional regulator {ECO:0000313|EMBL:AHK05033.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agr
scnpilot_expt_750_bf_scaffold_364_28
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35938..37260
DNA (1323bp) protein (441aa)
hutI; imidazolonepropionase HutI (EC:3.5.2.7) Tax=RBG_16_Deltaproteobacteria_54_11_curated
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] id=14630643 bin=bin9_gal15 species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
imidazolonepropionase (EC:3.5.2.7)
scnpilot_expt_750_bf_scaffold_364_29
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37257..38405
DNA (1149bp) protein (383aa)
high affinity branched-chain amino acid amino acid ABC transporter substrate-binding protein (EC:3.4.22.34)
Branched-chain amino acid ABC transporter, amino acid-binding protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTJ6_9PROT
Branched-chain amino acid ABC transporter, amino acid-binding protein {ECO:0000313|EMBL:EDP64131.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacteriu
Displaying items 1-30 of 58 in total

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