ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6_partial

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 6.39 Longest contig: 101.11 Kbp Bin length: 5.31 Mbp GC content: 63.21 %
Contigs count: 470 Features count: 5644 rRNAs count: 0 tRNAs count: 44

Genome completeness

megabin RP 44 / 55 MC: 15 BSCG 44 / 51 MC: 12 ASCG 9 / 38 MC: 2

Description

from ESOM, highly fragmented

Displaying items 101-150 of 470 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_1999
Genus: Afipia (54.55%)
11 9578 bp 63.14 5.53 84.16
scnpilot_expt_750_bf_scaffold_2614
Genus: Hyphomicrobium (50%)
10 8980 bp 65.58 5.54 78.44
scnpilot_expt_750_bf_scaffold_2359
Class: Alphaproteobacteria (57.14%)
7 6547 bp 63.02 5.54 95.17
scnpilot_expt_750_bf_scaffold_3972
Species: Afipia broomeae (60%)
5 5411 bp 62.04 5.54 96.69
scnpilot_expt_750_bf_scaffold_2540
Order: Rhizobiales (66.67%)
18 14722 bp 63.67 5.55 79.52
scnpilot_expt_750_bf_scaffold_7567
Phylum: Proteobacteria (85.71%)
7 5679 bp 65.63 5.55 99.05
scnpilot_expt_750_bf_scaffold_5268
Class: Alphaproteobacteria (85.71%)
7 6880 bp 65.32 5.56 94.10
scnpilot_expt_750_bf_scaffold_2619
Phylum: Proteobacteria (66.67%)
9 7058 bp 64.40 5.56 84.97
scnpilot_expt_750_bf_scaffold_2621
Phylum: Proteobacteria (50%)
16 12051 bp 64.48 5.56 79.89
scnpilot_expt_750_bf_scaffold_3044
Class: Alphaproteobacteria (50%)
6 5432 bp 66.90 5.57 90.52
scnpilot_expt_750_bf_scaffold_1931
Phylum: Proteobacteria (68.75%)
16 14009 bp 62.48 5.57 94.42
scnpilot_expt_750_bf_scaffold_3505
Genus: Hyphomicrobium (60%)
5 5738 bp 64.57 5.58 82.50
scnpilot_expt_750_bf_scaffold_2467
Order: Rhodospirillales (57.14%)
7 6321 bp 65.84 5.58 91.46
scnpilot_expt_750_bf_scaffold_3059
Genus: Hyphomicrobium (62.5%)
8 5421 bp 63.94 5.58 82.79
scnpilot_expt_750_bf_scaffold_2017
Domain: Bacteria (50%)
8 7343 bp 64.54 5.58 85.96
scnpilot_expt_750_bf_scaffold_4587
Class: Betaproteobacteria (50%)
6 5014 bp 63.76 5.58 81.25
scnpilot_expt_750_bf_scaffold_2052
Phylum: Proteobacteria (72.73%)
11 10132 bp 58.21 5.58 93.56
scnpilot_expt_750_bf_scaffold_1742
Class: Alphaproteobacteria (60%)
10 10103 bp 65.88 5.59 90.60
scnpilot_expt_750_bf_scaffold_2415
Genus: Hyphomicrobium (55.56%)
9 6438 bp 67.04 5.59 94.08
scnpilot_expt_750_bf_scaffold_2099
Genus: Hyphomicrobium (71.43%)
7 8851 bp 64.96 5.59 81.65
scnpilot_expt_750_bf_scaffold_5719
Order: Rhizobiales (50%)
8 6249 bp 63.79 5.60 93.33
scnpilot_expt_750_bf_scaffold_5997
Order: Rhizobiales (50%)
6 5312 bp 65.85 5.60 96.69
scnpilot_expt_750_bf_scaffold_4393
Phylum: Proteobacteria (57.14%)
7 6702 bp 67.55 5.60 91.50
scnpilot_expt_750_bf_scaffold_2255
Order: Rhizobiales (50%)
10 7264 bp 63.44 5.61 86.87
scnpilot_expt_750_bf_scaffold_5341
Order: Rhizobiales (63.64%)
11 9118 bp 66.52 5.62 85.22
scnpilot_expt_750_bf_scaffold_2786
Phylum: Proteobacteria (50%)
10 8876 bp 63.00 5.63 62.90
scnpilot_expt_750_bf_scaffold_5374
Class: Alphaproteobacteria (77.78%)
9 9266 bp 61.95 5.64 89.78
scnpilot_expt_750_bf_scaffold_3425
Species: Afipia broomeae (62.5%)
8 5010 bp 60.70 5.64 78.68
scnpilot_expt_750_bf_scaffold_1439
Genus: Afipia (61.54%)
13 9623 bp 63.21 5.64 83.63
scnpilot_expt_750_bf_scaffold_2628
Phylum: Proteobacteria (57.14%)
7 8641 bp 63.60 5.64 90.96
scnpilot_expt_750_bf_scaffold_1840
Order: Rhizobiales (69.23%)
13 9738 bp 65.96 5.65 89.28
scnpilot_expt_750_bf_scaffold_2753
Domain: Bacteria (57.14%)
7 5829 bp 63.97 5.66 82.09
scnpilot_expt_750_bf_scaffold_2250
Class: Alphaproteobacteria (50%)
6 6761 bp 65.40 5.66 83.46
scnpilot_expt_750_bf_scaffold_2860
Order: Rhizobiales (62.5%)
8 5679 bp 65.56 5.68 86.90
scnpilot_expt_750_bf_scaffold_1451
Genus: Afipia (72.73%)
11 13021 bp 62.12 5.68 91.88
scnpilot_expt_750_bf_scaffold_2726
Class: Alphaproteobacteria (62.5%)
8 7320 bp 63.96 5.70 91.48
scnpilot_expt_750_bf_scaffold_2001
Order: Rhizobiales (50%)
6 7405 bp 65.81 5.71 86.62
scnpilot_expt_750_bf_scaffold_2592
Order: Rhizobiales (50%)
18 15418 bp 64.50 5.71 81.70
scnpilot_expt_750_bf_scaffold_3856
Order: Rhizobiales (73.33%)
15 12665 bp 59.14 5.72 87.09
scnpilot_expt_750_bf_scaffold_4604
Order: Rhizobiales (71.43%)
14 11368 bp 66.35 5.72 86.66
scnpilot_expt_750_bf_scaffold_1987
Genus: Hyphomicrobium (60%)
5 7452 bp 61.77 5.74 89.49
scnpilot_expt_750_bf_scaffold_6659
Phylum: Proteobacteria (71.43%)
7 6350 bp 65.24 5.75 77.43
scnpilot_expt_750_bf_scaffold_1565
Order: Rhizobiales (50%)
10 8957 bp 66.03 5.75 79.61
scnpilot_expt_750_bf_scaffold_2090
Genus: Methylobacterium (62.5%)
8 7128 bp 64.34 5.75 89.35
scnpilot_expt_750_bf_scaffold_3191
Phylum: Proteobacteria (50%)
6 6732 bp 60.67 5.76 83.82
scnpilot_expt_750_bf_scaffold_5494
Class: Alphaproteobacteria (71.43%)
7 5113 bp 61.02 5.77 82.50
scnpilot_expt_750_bf_scaffold_8232
Species: Afipia broomeae (57.14%)
7 5800 bp 62.53 5.78 88.66
scnpilot_expt_750_bf_scaffold_11903
Phylum: Proteobacteria (55.56%)
9 5190 bp 63.83 5.78 80.52
scnpilot_expt_750_bf_scaffold_2878 16 13663 bp 65.36 5.78 88.84
scnpilot_expt_750_bf_scaffold_2897 7 5618 bp 64.52 5.78 81.38
Displaying items 101-150 of 470 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.