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scnpilot_solids2_trim150_scaffold_96

Search features with annotation key words

Displaying items 151-180 of 244 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_96_147
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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176741..177811
DNA (1071bp) protein (357aa)
16S RNA G1207 methylase RsmC n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR3_9GAMM
16S RNA G1207 methylase RsmC
16S RNA G1207 methylase RsmC {ECO:0000313|EMBL:AGG89521.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_148
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

177808..178509
DNA (702bp) protein (234aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR2_9GAMM
scnpilot_solids2_trim150_scaffold_96_149
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

178671..180230
DNA (1560bp) protein (520aa)
UPF0061 protein UU7_04657 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W470_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_96_trna_5
unknown

Not on your lists

comp(180284..180357)
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_96_150
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

180636..182231
DNA (1596bp) protein (532aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ7_9GAMM rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIL97385.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD-dependent aldehyde dehydrogenase rbh
scnpilot_solids2_trim150_scaffold_96_151
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182381..182680
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD43_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97384.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_96_152
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182686..183459
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003461E0D rbh
Methyltransferase {ECO:0000313|EMBL:AHX12692.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
methylase involved in ubiquinone/menaquinone biosynthesis
scnpilot_solids2_trim150_scaffold_96_153
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183460..184512
DNA (1053bp) protein (351aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W465_9GAMM
dihydroorotate dehydrogenase, subfamily 2
scnpilot_solids2_trim150_scaffold_96_154
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184502..185596
DNA (1095bp) protein (365aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ2_9GAMM
scnpilot_solids2_trim150_scaffold_96_155
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185771..187888
DNA (2118bp) protein (706aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Polyphosphate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDD6_9GAMM
polyphosphate kinase 1
scnpilot_solids2_trim150_scaffold_96_trna_4
unknown

Not on your lists

comp(187940..188012)
DNA (73bp)
transferRNA Ala
scnpilot_solids2_trim150_scaffold_96_156
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188029..189180)
DNA (1152bp) protein (384aa)
Ribonuclease D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDD4_9GAMM
Ribonuclease D {ECO:0000313|EMBL:EIL97475.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease D
scnpilot_solids2_trim150_scaffold_96_157
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

189296..191257
DNA (1962bp) protein (654aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NF66_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89505.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_96_158
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(191286..192245)
DNA (960bp) protein (320aa)
Thioredoxin reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA4_9GAMM
thioredoxin-disulfide reductase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_96_159
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

192477..193541
DNA (1065bp) protein (355aa)
L-alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W730_9GAMM
Alanine dehydrogenase {ECO:0000313|EMBL:EIL95271.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_96_160
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

193574..195895
DNA (2322bp) protein (774aa)
DNA segregation ATPase FtsK n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA6_9GAMM rbh
Cell division protein FtsK {ECO:0000313|EMBL:AHX13575.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA segregation ATPase, FtsK/SpoIIIE family rbh
scnpilot_solids2_trim150_scaffold_96_161
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196023..196688
DNA (666bp) protein (222aa)
Lipoprotein chaperone n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDN2_9GAMM
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
periplasmic chaperone LolA
scnpilot_solids2_trim150_scaffold_96_162
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196697..197380
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0K4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92995.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_96_163
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

197420..198757
DNA (1338bp) protein (446aa)
Recombination factor protein RarA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0K5_9GAMM
Recombination factor protein RarA {ECO:0000313|EMBL:EIL92996.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase; K07478 putative ATPase rbh
scnpilot_solids2_trim150_scaffold_96_164
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199008..200288
DNA (1281bp) protein (427aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WA42_9GAMM
scnpilot_solids2_trim150_scaffold_96_165
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

200356..200754
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W738_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95279.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_96_trna_3
unknown

Not on your lists

200797..200883
DNA (87bp)
transferRNA Ser
scnpilot_solids2_trim150_scaffold_96_166
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

201082..202059
DNA (978bp) protein (326aa)
Nitrilase n=2 Tax=Gluconobacter oxydans RepID=K7SIB4_GLUOY
nitrilase
Nitrilase {ECO:0000313|EMBL:AFW03099.1}; TaxID=1224746 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
scnpilot_solids2_trim150_scaffold_96_167
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

202240..203220
DNA (981bp) protein (327aa)
ABC transporter substrate-binding protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B65358
ABC-type transporter, periplasmic subunit {ECO:0000313|EMBL:AHG92539.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hemin ABC transporter periplasmic protein; K02016 iron complex transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_96_168
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

203224..204288
DNA (1065bp) protein (355aa)
Transport system permease protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QP08_SPILD rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG92538.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
transporter permease; K02015 iron complex transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_96_169
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

204281..205108
DNA (828bp) protein (276aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
hemin ABC transporter ATP-binding protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B3DB4B
ABC transporter related protein {ECO:0000313|EMBL:AHG92537.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
scnpilot_solids2_trim150_scaffold_96_170
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

205143..206234
DNA (1092bp) protein (364aa)
Transport system permease protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QP08_SPILD
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AHG92538.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
transporter permease; K02015 iron complex transport system permease protein
scnpilot_solids2_trim150_scaffold_96_171
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

207078..209996
DNA (2919bp) protein (973aa)
TonB-dependent receptor n=1 Tax=Xanthomonas axonopodis RepID=UPI00031D8E6B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN42097.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_96_172
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(210089..211900)
DNA (1812bp) protein (604aa)
TPR repeat protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLC0_9GAMM rbh
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_solids2_trim150_scaffold_96_173
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(212019..213344)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00037F214E
Aspartyl beta-hydroxylase {ECO:0000313|EMBL:AIF49479.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
aspartyl/asparaginyl beta-hydroxylase-like dioxygenase
Displaying items 151-180 of 244 in total

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