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scnpilot_solids2_trim150_scaffold_270

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_270_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..171)
DNA (171bp) protein (57aa)
AMP-dependent synthetase and ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R7_9BRAD
Putative sulfoacetate--CoA ligase {ECO:0000313|EMBL:CEG09977.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_270_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..1070)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG09978.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_270_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1084..1512)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV82_AFIFE
Putative domain 1 {ECO:0000313|EMBL:CEG09979.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
phenylacetic acid degradation-like protein
scnpilot_solids2_trim150_scaffold_270_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1549..2565)
DNA (1017bp) protein (339aa)
putative zinc-containing alcohol dehydrogenase (EC:1.1.1.1); K00001 alcohol dehydrogenase [EC:1.1.1.1] rbh
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R4_9BRAD rbh
Crotonyl-CoA reductase {ECO:0000313|EMBL:CEG09980.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_270_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2770..3516
DNA (747bp) protein (249aa)
Transcriptional regulator, GntR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R3_9BRAD rbh
L-lactate utilization operon repressor {ECO:0000313|EMBL:CEG09981.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_270_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3546..4919)
DNA (1374bp) protein (458aa)
UbiD family decarboxylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R2_9BRAD rbh
Phenolic acid decarboxylase subunit C {ECO:0000313|EMBL:CEG09982.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
UbiD family decarboxylase rbh
scnpilot_solids2_trim150_scaffold_270_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5944
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R1_9BRAD rbh
HTH-type transcriptional activator CmpR {ECO:0000313|EMBL:CEG09983.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
LysR family transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_270_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6053..6724
DNA (672bp) protein (224aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1R0_9BRAD rbh
scnpilot_solids2_trim150_scaffold_270_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6633..7097)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNZ0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30134.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
conserved protein of unknown function; putative MaoC dehydratase domain
scnpilot_solids2_trim150_scaffold_270_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7109..8488)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRM0_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30135.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
major facilitator superfamily protein rbh
scnpilot_solids2_trim150_scaffold_270_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8565..9350)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q8_9BRAD rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EFI53638.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_270_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9369..10895)
DNA (1527bp) protein (509aa)
4-chlorobenzoate--CoA ligase (EC:6.2.1.-) rbh
AMP-dependent synthetase and ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q7_9BRAD rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EFI53637.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_270_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10888..11433)
DNA (546bp) protein (182aa)
oxidoreductase with iron-sulfur subunit; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV95_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30138.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_270_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11421..12248)
DNA (828bp) protein (276aa)
FAD-binding molybdopterin dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] rbh
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNZ4_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30139.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_270_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12245..15244)
DNA (3000bp) protein (1000aa)
carbon-monoxide dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2] rbh
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q4_9BRAD rbh
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:EFI53634.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_270_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15707..16543)
DNA (837bp) protein (279aa)
Blr4715 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89L33_BRADU
outer-membrane immunogenic protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ70275.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
scnpilot_solids2_trim150_scaffold_270_trna_1
unknown

Not on your lists

comp(16867..16948)
DNA (82bp)
transferRNA Leu
scnpilot_solids2_trim150_scaffold_270_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17110..18075
DNA (966bp) protein (322aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q3_9BRAD rbh
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:CEG09993.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
NADH dehydrogenase (ubiquinone) rbh
scnpilot_solids2_trim150_scaffold_270_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18154..18960)
DNA (807bp) protein (269aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
uppP; UDP-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] rbh
Undecaprenyl-diphosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q2_9BRAD rbh
scnpilot_solids2_trim150_scaffold_270_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19164..19856
DNA (693bp) protein (231aa)
putative glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q1_9BRAD rbh
Stringent starvation protein A {ECO:0000313|EMBL:CEG09995.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_270_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19972..20763)
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1Q0_9BRAD rbh
Acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase {ECO:0000313|EMBL:CEG09996.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
alpha/beta hydrolase rbh
scnpilot_solids2_trim150_scaffold_270_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20953..22236
DNA (1284bp) protein (428aa)
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1P9_9BRAD rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI53629.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glycosyltransferase rbh
scnpilot_solids2_trim150_scaffold_270_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22285..22887
DNA (603bp) protein (201aa)
Translation initiation factor IF-3 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1P8_9BRAD rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 rbh
scnpilot_solids2_trim150_scaffold_270_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22973..23098)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1P7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09999.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_270_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23505..23705
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=2 Tax=Afipia RepID=D6V1P6_9BRAD
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
scnpilot_solids2_trim150_scaffold_270_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23770..24129
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRN5_AFIFE
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
scnpilot_solids2_trim150_scaffold_270_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24289..25371
DNA (1083bp) protein (361aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1P4_9BRAD rbh
scnpilot_solids2_trim150_scaffold_270_27
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25425..25862
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E940FA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86173.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
scnpilot_solids2_trim150_scaffold_270_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25859..28282
DNA (2424bp) protein (808aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1P3_9BRAD rbh
scnpilot_solids2_trim150_scaffold_270_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28527..29012
DNA (486bp) protein (162aa)
Transcriptional regulator, MarR family n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AWY0_9CAUL
Transcriptional regulator, MarR family protein {ECO:0000313|EMBL:KEZ16865.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
histone acetyltransferase HPA2
Displaying items 1-30 of 60 in total

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