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scnpilot_solids2_trim150_scaffold_360_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_360_curated_1
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..114
DNA (114bp) protein (38aa)
UPI0003C7DDB4 related cluster n=1 Tax=unknown RepID=UPI0003C7DDB4
Helicase family protein {ECO:0000313|EMBL:KID32652.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
DEAD/DEAH box helicase
scnpilot_solids2_trim150_scaffold_360_curated_2

Not on your lists

comp(230..652)
DNA (423bp) protein (141aa)
PilT domain-containing protein n=1 Tax=mine drainage metagenome RepID=T0ZNL3_9ZZZZ
PilT domain-containing protein {ECO:0000313|EMBL:EQD46263.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PilT domain-containing protein; K07062
scnpilot_solids2_trim150_scaffold_360_curated_3
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(645..869)
DNA (225bp) protein (75aa)
Transcriptional regulator, AbrB family n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BIA3_CHLPD
AbrB family transcriptional regulator
Regulator of stationary/sporulation SpoVT/AbrB {ECO:0000313|EMBL:GAJ29305.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
scnpilot_solids2_trim150_scaffold_360_curated_4
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(885..3113)
DNA (2229bp) protein (743aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8V0_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV81048.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_360_curated_5
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3359..3556
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003771544
Predicted protein {ECO:0000313|EMBL:EFL11286.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_360_curated_6
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3615..4217
DNA (603bp) protein (201aa)
molybdenum cofactor biosynthesis protein; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
4-diphosphocytidyl-2C-methyl-D-erythritol synthase n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UXN6_9ACTO
4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000313|EMBL:EGD42128.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
scnpilot_solids2_trim150_scaffold_360_curated_7
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4346..5761
DNA (1416bp) protein (472aa)
malate dehydrogenase (EC:1.1.1.38); K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:ACU34432.1}; EC=1.1.1.38 {ECO:0000313|EMBL:ACU34432.1};; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WHY1_ACTMD
scnpilot_solids2_trim150_scaffold_360_curated_8
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5790..6380
DNA (591bp) protein (197aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0R1_PSEUX
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C
scnpilot_solids2_trim150_scaffold_360_curated_9
Mycobacterium sinense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6386..6934
DNA (549bp) protein (183aa)
Molybdopterin biosynthesis Mog protein n=1 Tax=Mycobacterium sp. (strain JDM601) RepID=F5YSF7_MYCSD
mog; molybdopterin biosynthesis Mog protein
Molybdopterin biosynthesis Mog protein {ECO:0000313|EMBL:AEF34793.1}; TaxID=875328 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain JDM601).;"
scnpilot_solids2_trim150_scaffold_360_curated_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6934..7359
DNA (426bp) protein (142aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdopterin biosynthesis MoaE protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8U1_NAKMY
Molybdopterin biosynthesis MoaE protein {ECO:0000313|EMBL:ACV81039.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_360_curated_11
Mycobacterium canettii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7620..8003
DNA (384bp) protein (128aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1048245 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium canettii (strain CIPT 140010059).;"
Ribonuclease VapC n=3 Tax=Mycobacterium canettii RepID=G0TG71_MYCCP
Conserved protein of unknown function with PIN domain
scnpilot_solids2_trim150_scaffold_360_curated_12
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8134..8673
DNA (540bp) protein (180aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B265_STRRD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACZ89289.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
scnpilot_solids2_trim150_scaffold_360_curated_13
unknown

Not on your lists

8670..9791
DNA (1122bp) protein (374aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_360_curated_14
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9862..10974
DNA (1113bp) protein (371aa)
Alanine rich lipoprotein LppW n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4SRZ1_AMYOR
Uncharacterized protein {ECO:0000313|EMBL:AJK57991.1}; TaxID=1460371 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
alanine rich lipoprotein LppW
scnpilot_solids2_trim150_scaffold_360_curated_15
Renibacterium salmoninarum, Renibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11039..11827
DNA (789bp) protein (263aa)
haloacid dehalogenase n=1 Tax=Humibacter albus RepID=UPI0003B318F0
HAD superfamily hydrolase
Predicted hydrolase (HAD superfamily) {ECO:0000313|EMBL:ABY23270.1}; TaxID=288705 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Renibacterium.;" source="Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484; / NBRC 15589 / NCIMB 2235).;"
scnpilot_solids2_trim150_scaffold_360_curated_16
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11830..13017
DNA (1188bp) protein (396aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Humibacter albus RepID=UPI0003B702A3
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:ERK70816.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
putative phosphate/phosphonate ABC transportersubstrate-binding protein; K02044 phosphonate transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_360_curated_17
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13055..13870
DNA (816bp) protein (272aa)
phosphonate ABC transporter permease n=1 Tax=Humibacter albus RepID=UPI0003B4B5EB
Phosphonate ABC transporter permease protein phnE2 {ECO:0000313|EMBL:AJW42823.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein
scnpilot_solids2_trim150_scaffold_360_curated_18
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13867..14730
DNA (864bp) protein (288aa)
Phosphonate ABC transporter, permease protein PhnE (Fragment) n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RNM3_LEIAQ
Phosphonate ABC transporter, permease protein PhnE {ECO:0000313|EMBL:ERK70174.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
phosphonates transport system permease; K02042 phosphonate transport system permease protein
scnpilot_solids2_trim150_scaffold_360_curated_19
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14799..15677
DNA (879bp) protein (293aa)
Transcriptional regulator, RpiR family n=1 Tax=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) RepID=A9WNR4_RENSM
Transcriptional regulator, RpiR {ECO:0000313|EMBL:AJW42825.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
RpiR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_360_curated_20
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15761..16672
DNA (912bp) protein (304aa)
ABC transporter ATP-binding protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00035E5099
ABC transport system ATP-binding protein {ECO:0000313|EMBL:AIJ23605.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
ABC-type transporter
scnpilot_solids2_trim150_scaffold_360_curated_21
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16669..17898
DNA (1230bp) protein (410aa)
ABC transporter permease n=1 Tax=Amycolatopsis nigrescens RepID=UPI00035F15F6
Predicted protein {ECO:0000313|EMBL:EFL06004.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
ABC transporter permease
scnpilot_solids2_trim150_scaffold_360_curated_22
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18096..18983
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SF36_NOCSJ
Uncharacterized protein {ECO:0000313|EMBL:KGN29567.1}; TaxID=1385518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_360_curated_23
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19011..19208)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1GE40_9PSEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOD69567.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
scnpilot_solids2_trim150_scaffold_360_curated_24
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19317..20384)
DNA (1068bp) protein (356aa)
aminotransferase class V n=1 Tax=Brevibacterium linens RepID=UPI0000510357
class V aminotransferase
Aminotransferase class V {ECO:0000313|EMBL:ACV81072.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_360_curated_25
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20643..21071)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X8T2_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV81030.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids2_trim150_scaffold_360_curated_26
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21694..21993)
DNA (300bp) protein (100aa)
ThiamineS protein n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WHY6_ACTMD
sulfur carrier protein ThiS
ThiamineS protein {ECO:0000313|EMBL:ACU34437.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
scnpilot_solids2_trim150_scaffold_360_curated_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

22141..23487
DNA (1347bp) protein (449aa)
Membrane protein, bmp family n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TBV1_HELMI
membrane protein, bmp family; K07335 basic membrane protein A and related proteins
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids2_trim150_scaffold_360_curated_28
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

23514..25109
DNA (1596bp) protein (532aa)
putative ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Putative ABC transporter ATP-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZ22_CALAS
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids2_trim150_scaffold_360_curated_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

25109..26257
DNA (1149bp) protein (383aa)
ABC transporter permease; K02057 simple sugar transport system permease protein id=14628149 bin=bin8_Chloro species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
inner-membrane translocator; K02057 simple sugar transport system permease protein
Tax=RBG_16_Actinobacteria_68_12_curated
scnpilot_solids2_trim150_scaffold_360_curated_30
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

26254..27216
DNA (963bp) protein (321aa)
Nucleoside ABC transporter membrane protein n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J6I8_DESRM
inner-membrane translocator; K02057 simple sugar transport system permease protein
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying items 1-30 of 49 in total

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