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scnpilot_solids2_trim150_scaffold_1017_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1017_curated_1
unknown

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1017_curated_2
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(341..598)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9ENF0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EKU97491.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1017_curated_3
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(710..1183)
DNA (474bp) protein (158aa)
S-adenosylmethionine decarboxylase-like protein (EC:4.1.1.50); K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50]
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00464}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00464, ECO:0000313|EMBL:CCG07834.1};; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SSF5_RHOPH
scnpilot_solids2_trim150_scaffold_1017_curated_4
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1508..2404
DNA (897bp) protein (299aa)
spermidine synthase; K00797 spermidine synthase [EC:2.5.1.16]
Spermidine synthase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GMG3_9PROT
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
scnpilot_solids2_trim150_scaffold_1017_curated_5
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2347..2925
DNA (579bp) protein (193aa)
DNA-binding protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B46EFF
DNA-binding protein {ECO:0000313|EMBL:KJR65565.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
prolyl-tRNA synthetase associated protein
scnpilot_solids2_trim150_scaffold_1017_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3123..4073
DNA (951bp) protein (317aa)
Thioredoxin n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSP9_PARL1
thioredoxin; K05838 putative thioredoxin
Thioredoxin {ECO:0000313|EMBL:ABS62932.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_7
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4081..4737
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035F3FBC
peptidase S16, lon-like protein; K07157
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
scnpilot_solids2_trim150_scaffold_1017_curated_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4737..4928
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B319B2
hypothetical protein; K09791 hypothetical protein
UPF0434 protein Dtpsy_1553 {ECO:0000255|HAMAP-Rule:MF_01187}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids2_trim150_scaffold_1017_curated_9
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4933..5298
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IU05_RHOCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI99882.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
scnpilot_solids2_trim150_scaffold_1017_curated_10
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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5361..6296
DNA (936bp) protein (312aa)
Inward rectifier potassium channel n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9W8U5_9CYAN
Inward rectifier potassium channel
Inward rectifier potassium channel {ECO:0000313|EMBL:AFZ16638.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
scnpilot_solids2_trim150_scaffold_1017_curated_11
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6308..6913
DNA (606bp) protein (202aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:KIL97415.1}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000256|SAAS:SAAS00089872};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=LEUD_MAGSA
scnpilot_solids2_trim150_scaffold_1017_curated_12
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6925..7665
DNA (741bp) protein (247aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAM99972.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAM99972.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W516_9BURK
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_1017_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7668..8774
DNA (1107bp) protein (369aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT12_PARL1
scnpilot_solids2_trim150_scaffold_1017_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8786..9754)
DNA (969bp) protein (323aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ89_PARL1
alcohol dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABS62072.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9751..10521)
DNA (771bp) protein (257aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ84_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS62067.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_16
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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10572..10997
DNA (426bp) protein (142aa)
Thioesterase superfamily protein n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RV78_ASTEC
Thioesterase family protein domain protein {ECO:0000313|EMBL:CDO60142.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
thioesterase superfamily protein
scnpilot_solids2_trim150_scaffold_1017_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10994..11407
DNA (414bp) protein (138aa)
Thioesterase superfamily protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ80_PARL1
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABS62063.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_18
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11417..12469)
DNA (1053bp) protein (351aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FX29_PHAMO
scnpilot_solids2_trim150_scaffold_1017_curated_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12555..13190
DNA (636bp) protein (212aa)
Putative phage repressor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ75_PARL1
putative phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABS62058.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_20
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13203..14819)
DNA (1617bp) protein (539aa)
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
lysyl-tRNA synthetase n=1 Tax=Hirschia maritima RepID=UPI00036BD5D5
scnpilot_solids2_trim150_scaffold_1017_curated_21
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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14887..17028
DNA (2142bp) protein (714aa)
Putative multi-sensor Histidine kinase n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B491_METEA
putative multi-sensor Histidine kinase
Tax=CG_Delta_03
scnpilot_solids2_trim150_scaffold_1017_curated_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17074..19854
DNA (2781bp) protein (927aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
Helicase c2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ70_PARL1
Helicase c2 {ECO:0000313|EMBL:ABS62053.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_1017_curated_23
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19829..21049
DNA (1221bp) protein (407aa)
2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13]
2-deoxycytidine 5-triphosphate deaminase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ50_PARL1
2'-deoxycytidine 5'-triphosphate deaminase {ECO:0000313|EMBL:GAK45553.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scnpilot_solids2_trim150_scaffold_1017_curated_24
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21241..21870)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JE20_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64035.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 24 items

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