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solids_Rhizobiales_2

SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 56.04 Kbp Bin length: 2.69 Mbp GC content: 66.69 %
Contigs count: 167 Features count: 2701 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 19 / 55 MC: 1 BSCG 19 / 51 ASCG 9 / 38 MC: 1
Displaying items 1-50 of 167 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_575_curated
Class: Alphaproteobacteria (63.89%)
36 32906 bp 63.62 1.00 87.18
scnpilot_solids2_trim150_scaffold_2884_curated
Order: Rhizobiales (77.78%)
9 8306 bp 67.70 1.00 90.40
scnpilot_solids2_trim150_scaffold_2573_curated
Order: Rhizobiales (58.33%)
12 9258 bp 65.54 1.00 88.08
scnpilot_solids2_trim150_scaffold_4076_curated
Order: Rhizobiales (83.33%)
6 5630 bp 67.78 1.00 89.89
scnpilot_solids2_trim150_scaffold_708_curated
Order: Rhizobiales (88.89%)
27 27394 bp 68.05 1.00 91.87
scnpilot_solids2_trim150_scaffold_2696_curated
Order: Rhizobiales (81.82%)
11 8926 bp 67.84 1.00 80.33
scnpilot_solids2_trim150_scaffold_1016_curated
Class: Alphaproteobacteria (68.18%)
22 21249 bp 65.74 1.00 94.44
scnpilot_solids2_trim150_scaffold_4067_curated
Order: Rhizobiales (75%)
8 7169 bp 65.80 1.00 89.26
scnpilot_solids2_trim150_scaffold_1704_curated
Class: Alphaproteobacteria (73.33%)
15 13605 bp 65.46 1.00 95.08
scnpilot_solids2_trim150_scaffold_464_curated
Order: Rhizobiales (52.5%)
40 39251 bp 66.20 1.00 91.13
scnpilot_solids2_trim150_scaffold_1548_curated
Order: Rhizobiales (86.67%)
15 14881 bp 67.67 1.00 92.15
scnpilot_solids2_trim150_scaffold_1549_curated
Order: Rhizobiales (85.71%)
14 14923 bp 66.27 1.00 86.28
scnpilot_solids2_trim150_scaffold_1251_curated
Order: Rhizobiales (75%)
16 17838 bp 67.98 1.00 91.10
scnpilot_solids2_trim150_scaffold_2076_curated
Order: Rhizobiales (70%)
10 11448 bp 66.18 1.00 86.69
scnpilot_solids2_trim150_scaffold_2075_curated
Order: Rhizobiales (91.67%)
12 11352 bp 67.50 1.00 92.28
scnpilot_solids2_trim150_scaffold_974_curated
Order: Rhizobiales (88%)
25 24968 bp 66.08 1.00 85.74
scnpilot_solids2_trim150_scaffold_1641_curated
Order: Rhizobiales (88.24%)
17 14246 bp 66.65 1.00 89.92
scnpilot_solids2_trim150_scaffold_979_curated
Order: Rhizobiales (60.87%)
23 22067 bp 66.70 1.00 87.95
scnpilot_solids2_trim150_scaffold_1798_curated
Class: Alphaproteobacteria (68.75%)
16 12841 bp 68.54 1.00 91.75
scnpilot_solids2_trim150_scaffold_2248_curated
Order: Rhizobiales (77.78%)
9 10651 bp 66.83 1.00 92.72
scnpilot_solids2_trim150_scaffold_1415_curated
Order: Rhizobiales (82.35%)
17 16046 bp 65.09 1.00 88.94
scnpilot_solids2_trim150_scaffold_3282_curated
Order: Rhizobiales (100%)
8 7307 bp 66.96 1.00 92.54
scnpilot_solids2_trim150_scaffold_2471_curated
Order: Rhizobiales (60%)
10 9651 bp 66.65 1.00 88.90
scnpilot_solids2_trim150_scaffold_4375_curated
Order: Rhizobiales (100%)
7 5247 bp 68.61 1.00 95.48
scnpilot_solids2_trim150_scaffold_2369_curated
Order: Rhizobiales (81.82%)
11 9939 bp 65.93 1.00 83.76
scnpilot_solids2_trim150_scaffold_2179_curated
Order: Rhizobiales (85.71%)
7 10977 bp 66.60 1.00 91.39
scnpilot_solids2_trim150_scaffold_2177_curated
Order: Rhizobiales (62.5%)
8 10969 bp 67.12 1.00 91.79
scnpilot_solids2_trim150_scaffold_2174_curated
Order: Rhizobiales (87.5%)
16 12331 bp 67.24 1.00 90.99
scnpilot_solids2_trim150_scaffold_4274_curated
Order: Rhizobiales (100%)
5 5389 bp 69.92 1.00 93.19
scnpilot_solids2_trim150_scaffold_4271_curated
Order: Rhizobiales (66.67%)
6 5390 bp 66.46 1.00 79.54
scnpilot_solids2_trim150_scaffold_3367_curated
Class: Alphaproteobacteria (69.23%)
13 12259 bp 64.83 1.00 92.23
scnpilot_solids2_trim150_scaffold_678_curated
Order: Rhizobiales (78.57%)
28 28627 bp 66.58 1.00 88.85
scnpilot_solids2_trim150_scaffold_679_curated
Order: Rhizobiales (88.46%)
26 28240 bp 67.91 1.00 88.73
scnpilot_solids2_trim150_scaffold_1366_curated
Order: Rhizobiales (75%)
20 16487 bp 65.69 1.00 90.05
scnpilot_solids2_trim150_scaffold_670_curated
Order: Rhizobiales (75%)
32 29599 bp 65.61 1.00 90.78
scnpilot_solids2_trim150_scaffold_3603_curated
Order: Rhizobiales (100%)
5 6530 bp 67.57 1.00 91.56
scnpilot_solids2_trim150_scaffold_3940_curated
Order: Rhizobiales (100%)
4 5907 bp 66.33 1.00 86.14
scnpilot_solids2_trim150_scaffold_1556_curated
Class: Alphaproteobacteria (70%)
10 14836 bp 68.54 1.00 94.70
scnpilot_solids2_trim150_scaffold_1713_curated
Order: Rhizobiales (72.73%)
11 13354 bp 67.20 1.00 91.34
scnpilot_solids2_trim150_scaffold_1710_curated
Class: Alphaproteobacteria (69.23%)
13 13258 bp 67.68 1.00 94.18
scnpilot_solids2_trim150_scaffold_686_curated
Order: Rhizobiales (72%)
25 30216 bp 66.37 1.00 90.10
scnpilot_solids2_trim150_scaffold_1072_curated
Order: Rhizobiales (78.95%)
19 20309 bp 69.13 1.00 96.16
scnpilot_solids2_trim150_scaffold_1769_curated
Order: Rhizobiales (78.57%)
14 13088 bp 67.55 1.00 90.95
scnpilot_solids2_trim150_scaffold_960_curated
Order: Rhizobiales (76.19%)
21 22401 bp 66.20 1.00 90.05
scnpilot_solids2_trim150_scaffold_3226_curated
Order: Rhizobiales (88.89%)
9 7446 bp 69.37 1.00 96.58
scnpilot_solids2_trim150_scaffold_2052_curated
Order: Rhizobiales (87.5%)
8 11618 bp 67.55 1.00 92.13
scnpilot_solids2_trim150_scaffold_2483_curated
Order: Rhizobiales (55.56%)
9 9585 bp 65.63 1.00 93.02
scnpilot_solids2_trim150_scaffold_3706_curated
Order: Rhizobiales (87.5%)
8 6352 bp 67.82 1.00 86.19
scnpilot_solids2_trim150_scaffold_2802_curated
Order: Rhizobiales (62.5%)
8 8324 bp 69.41 1.00 96.59
scnpilot_solids2_trim150_scaffold_1183_curated
Order: Rhizobiales (78.95%)
19 18628 bp 66.05 1.00 83.68
Displaying items 1-50 of 167 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.