ggKbase home page

SCNpilot_solid_1_scaffold_54

Search features with annotation key words

Displaying items 241-270 of 485 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_54_241
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256335..257225)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMY0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62417.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Ni
SCNpilot_solid_1_scaffold_54_242
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(257569..259287)
DNA (1719bp) protein (573aa)
feruloyl esterase (EC:3.1.1.73)
Feruloyl esterase {ECO:0000313|EMBL:AEF89301.1}; EC=3.1.1.73 {ECO:0000313|EMBL:AEF89301.1};; Flags: Precursor;; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Com
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000374ACD0 rbh
SCNpilot_solid_1_scaffold_54_243
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259619..261826)
DNA (2208bp) protein (736aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=232721 species="Bacteria; Proteo
malate synthase G (EC:2.3.3.9)
Malate synthase G n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2W6_ACISJ rbh
SCNpilot_solid_1_scaffold_54_244
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262036..263013
DNA (978bp) protein (326aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI00023758FE rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EHL24871.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
LysR family transcriptional regulator
SCNpilot_solid_1_scaffold_54_245
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

263010..263465
DNA (456bp) protein (152aa)
Putative transmembrane protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBD0_ACIET
hypothetical protein
Putative transmembrane protein {ECO:0000313|EMBL:ACM31814.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebre
SCNpilot_solid_1_scaffold_54_246
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(263507..263827)
DNA (321bp) protein (107aa)
PsiF repeat-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q598_ACIAP
PsiF repeat-containing protein
PsiF repeat-containing protein {ECO:0000313|EMBL:ADX44397.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sour
SCNpilot_solid_1_scaffold_54_247
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


263950..265629
DNA (1680bp) protein (560aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000255|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00123}; Short=ArgRS {ECO:0000255|HAMAP-Rule:
Arginine--tRNA ligase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=SYR_ACIET rbh
SCNpilot_solid_1_scaffold_54_248
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

265632..266294
DNA (663bp) protein (221aa)
sporulation protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003817DEE
Cell division protein {ECO:0000313|EMBL:GAD21845.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
sporulation domain-containing protein
SCNpilot_solid_1_scaffold_54_249
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

266354..267004
DNA (651bp) protein (217aa)
DSBA oxidoreductase n=1 Tax=Acidovorax avenae RepID=UPI00031DF233
DSBA oxidoreductase
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.
SCNpilot_solid_1_scaffold_54_250
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

267056..267787
DNA (732bp) protein (244aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Acidovorax sp. CF316 RepID=J0UDA5_9BURK
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
OstA family protein
SCNpilot_solid_1_scaffold_54_251
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

267784..268551
DNA (768bp) protein (256aa)
sulfate-transporting ATPase (EC:3.6.3.25)
ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AFF8D rbh
ABC transporter-like protein {ECO:0000313|EMBL:GAD21848.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. M
SCNpilot_solid_1_scaffold_54_252
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

268556..270097
DNA (1542bp) protein (514aa)
RNA polymerase subunit sigma-54 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D1622 rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax s
RNA polymerase sigma-54 subunit RpoN
SCNpilot_solid_1_scaffold_54_253
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

270109..271362
DNA (1254bp) protein (418aa)
RNA methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F2A58 rbh
rRNA (guanine-n(2)-)-methyltransferase
rRNA (Guanine-N(2)-)-methyltransferase {ECO:0000313|EMBL:GAO25371.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Al
SCNpilot_solid_1_scaffold_54_254
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

271346..271786
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003682AFA
hypothetical protein Tax=CG_Rhodof_04
hypothetical protein
SCNpilot_solid_1_scaffold_54_255
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

271902..273188
DNA (1287bp) protein (429aa)
Uracil-xanthine permease n=2 Tax=Alicycliphilus denitrificans RepID=E8TS34_ALIDB rbh
uracil-xanthine permease
Uracil-xanthine permease {ECO:0000313|EMBL:GAO25797.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus s
SCNpilot_solid_1_scaffold_54_256
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(273198..273890)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9M9Y5_ACIET rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31556.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
SCNpilot_solid_1_scaffold_54_257
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

274122..274256
DNA (135bp) protein (45aa)
phenylacetic acid degradation-like protein id=5081600 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
thioesterase superfamily protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_solid_1_scaffold_54_258
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

274243..274542
DNA (300bp) protein (100aa)
phenylacetic acid degradation protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000370D0D4
Esterase {ECO:0000313|EMBL:KJA11002.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_solid_1_scaffold_54_259
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(274587..275165)
DNA (579bp) protein (193aa)
ATP/cobalamin adenosyltransferase (EC:2.5.1.17)
ATP/cobalamin adenosyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRF2_ALIDB rbh
Cobalamin adenosyltransferase protein {ECO:0000313|EMBL:GAO25788.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Ali
SCNpilot_solid_1_scaffold_54_260
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

275245..276618
DNA (1374bp) protein (458aa)
Putative transporter-like membrane protein id=1270029 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
multidrug transporter MATE
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_solid_1_scaffold_54_261
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

276715..279855
DNA (3141bp) protein (1047aa)
diguanylate cyclase n=1 Tax=Acidovorax radicis RepID=UPI0002375821
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25002.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
SCNpilot_solid_1_scaffold_54_262
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

279982..281064
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sourc
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMK4_RUBGI rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_solid_1_scaffold_54_263
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

281061..281861
DNA (801bp) protein (267aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMK3_RUBGI rbh
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:BAL94240.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubriviv
SCNpilot_solid_1_scaffold_54_264
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

282000..282419
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=M4ULQ2_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH86162.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacear
SCNpilot_solid_1_scaffold_54_265
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

282436..283938
DNA (1503bp) protein (501aa)
Lignostilbene-alpha,beta-dioxygenase-like enzyme n=1 Tax=Acidovorax sp. CF316 RepID=J1ELF3_9BURK rbh
Lignostilbene-alpha,beta-dioxygenase-like enzyme {ECO:0000313|EMBL:EJE53081.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
Carotenoid oxygenase
SCNpilot_solid_1_scaffold_54_266
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

283949..284566
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6X0R4_9MICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAB97952.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
SCNpilot_solid_1_scaffold_54_267
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

284609..284965
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:EYD75593.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrob
hypothetical protein id=14629802 bin=bin8_Chloro species=Nocardia sp. 348MFTsu5.1 genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
SCNpilot_solid_1_scaffold_54_268
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

285054..286478
DNA (1425bp) protein (475aa)
D-lactate dehydrogenase (EC:1.1.2.4)
FAD linked oxidase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRD7_ALIDB rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:ADU97848.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycli
SCNpilot_solid_1_scaffold_54_269
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(286491..287732)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TRD4_ALIDB rbh
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:GAO25784.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Ali
SCNpilot_solid_1_scaffold_54_270
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287789..288829)
DNA (1041bp) protein (347aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCP8_ALIDK rbh
peptidoglycan-binding domain-containing protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:AEB82501.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliph
Displaying items 241-270 of 485 in total

View Taxonomy