ggKbase home page

SCNpilot_solid_1_scaffold_139

Search features with annotation key words

Displaying items 31-60 of 256 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_139_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31176..31781
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V725_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38321.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_solid_1_scaffold_139_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31914..35108
DNA (3195bp) protein (1065aa)
Acriflavin resistance protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTN5_VARPS rbh
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ACS20223.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sourc
SCNpilot_solid_1_scaffold_139_31
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35249..36652
DNA (1404bp) protein (468aa)
Outer membrane efflux protein, NodT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XFB9_VARPD
outer membrane efflux protein, NodT family
Outer membrane efflux protein, NodT family {ECO:0000313|EMBL:AGU50810.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
SCNpilot_solid_1_scaffold_139_32
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36796..37335
DNA (540bp) protein (180aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW6_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 2
Heme/copper-type cytochrome/quinol oxidase, subunit 2 {ECO:0000313|EMBL:AGG89571.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
SCNpilot_solid_1_scaffold_139_33
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37332..38840
DNA (1509bp) protein (503aa)
Cytochrome c oxidase subunit I n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW7_9GAMM
heme/copper-type cytochrome/quinol oxidase, subunit 1
Heme/copper-type cytochrome/quinol oxidase, subunit 1 {ECO:0000313|EMBL:AGG89572.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
SCNpilot_solid_1_scaffold_139_34
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38791..39429
DNA (639bp) protein (213aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA4_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EIL97445.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
SCNpilot_solid_1_scaffold_139_35
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39426..40004
DNA (579bp) protein (193aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA5_9GAMM
Putative transmembrane protein {ECO:0000313|EMBL:EIL97446.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
hypothetical protein
SCNpilot_solid_1_scaffold_139_36
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40086..40922
DNA (837bp) protein (279aa)
PEP phosphonomutase-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU59_9GAMM
PEP phosphonomutase-like enzyme Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
PEP phosphonomutase-like enzyme
SCNpilot_solid_1_scaffold_139_37
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41027..41611
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEX1_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85007.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
SCNpilot_solid_1_scaffold_139_38
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(41767..42066)
DNA (300bp) protein (100aa)
30S ribosomal protein S20 n=4 Tax=Comamonadaceae RepID=RS20_ACIET
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
SCNpilot_solid_1_scaffold_139_39
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42142..43740
DNA (1599bp) protein (533aa)
Integral membrane protein MviN n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA59_ACISJ rbh
integral membrane protein MviN
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" s
SCNpilot_solid_1_scaffold_139_40
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43737..44603
DNA (867bp) protein (289aa)
transglutaminase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003758007 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD20871.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
transglutaminase
SCNpilot_solid_1_scaffold_139_41
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44726..45118)
DNA (393bp) protein (131aa)
UspA domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TSD5_ALIDB
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:AEB85847.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
SCNpilot_solid_1_scaffold_139_42
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45203..46165)
DNA (963bp) protein (321aa)
permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003729578 rbh
Predicted permease {ECO:0000313|EMBL:GAD20879.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_solid_1_scaffold_139_43
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46235..47275)
DNA (1041bp) protein (347aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
phosphoribosylaminoimidazole synthetase n=1 Tax=Acidovorax avenae RepID=UPI000302DFED
SCNpilot_solid_1_scaffold_139_44
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47443..48150
DNA (708bp) protein (236aa)
chromosomal replication initiator DnaA id=12550204 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
chromosomal replication initiator DnaA Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
dnaa regulatory inactivator hda
SCNpilot_solid_1_scaffold_139_45
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48147..48857
DNA (711bp) protein (237aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 n=2 Tax=Alicycliphilus denitrificans RepID=E8TSE0_ALIDB rbh
HAD-superfamily hydrolase
HAD-superfamily subfamily IB hydrolase, TIGR01490 {ECO:0000313|EMBL:AEB85842.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;"
SCNpilot_solid_1_scaffold_139_46
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48854..50395
DNA (1542bp) protein (514aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=596153 species="Bacteria; Proteobacteria;
Poly(A) polymerase I n=2 Tax=Alicycliphilus denitrificans RepID=E8TSE1_ALIDB rbh
poly(A) polymerase
SCNpilot_solid_1_scaffold_139_47
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50392..50877
DNA (486bp) protein (162aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361F395
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase {ECO:0000313|EMBL:GAD20884.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
SCNpilot_solid_1_scaffold_139_48
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50887..51960)
DNA (1074bp) protein (358aa)
ferredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E0288 rbh
Cdp-6-deoxy-delta-3,4-glucoseen reductase {ECO:0000313|EMBL:GAD20887.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
CDP-6-deoxy-delta-3,4-glucoseen reductase
SCNpilot_solid_1_scaffold_139_49
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51987..52919
DNA (933bp) protein (311aa)
NAD-dependent dehydratase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036965C3 rbh
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:GAD20888.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
TrkA domain-containing protein
SCNpilot_solid_1_scaffold_139_50
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52907..53677)
DNA (771bp) protein (257aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WA45_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM43120.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
SCNpilot_solid_1_scaffold_139_51
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54195..55436)
DNA (1242bp) protein (414aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCE0_ACIET rbh
l-carnitine dehydratase/bile acid-inducible protein f
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ACM33845.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
SCNpilot_solid_1_scaffold_139_52
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55465..55737)
DNA (273bp) protein (91aa)
glutamate synthase n=1 Tax=Vibrio parahaemolyticus RepID=UPI0003676F77
glutamate synthetase
Glutamate synthase {ECO:0000313|EMBL:KJR35797.1}; TaxID=670 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus.;"
SCNpilot_solid_1_scaffold_139_53
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55870..56529
DNA (660bp) protein (220aa)
thiopurine S-methyltransferase (EC:2.1.1.67)
Thiopurine S-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00812}; EC=2.1.1.67 {ECO:0000255|HAMAP-Rule:MF_00812};; Thiopurine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00812}; TaxID=335283 species="
Thiopurine S-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQG8_9GAMM
SCNpilot_solid_1_scaffold_139_54
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56533..57111
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84745.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
SCNpilot_solid_1_scaffold_139_55
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57139..58485)
DNA (1347bp) protein (449aa)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=1268622 species="Bact
amino acid acetyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D5C5D rbh
amino-acid n-acetyltransferase
SCNpilot_solid_1_scaffold_139_56
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58549..62646
DNA (4098bp) protein (1366aa)
ATP-dependent helicase HrpA n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSN0_ALIDB rbh
ATP-dependent helicase hrpa
ATP-dependent helicase hrpa {ECO:0000313|EMBL:GAO22904.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilu
SCNpilot_solid_1_scaffold_139_57
unknown

Not on your lists

comp(62653..62880)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_139_58
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63012..63686)
DNA (675bp) protein (225aa)
lexa repressor (EC:3.4.21.88)
LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015}; EC=3.4.21.88 {ECO:0000255|HAMAP-Rule:MF_00015};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
LexA repressor n=2 Tax=Acidovorax RepID=LEXA_ACIET rbh
Displaying items 31-60 of 256 in total

View Taxonomy