ggKbase home page

SCNpilot_solid_1_scaffold_139

Search features with annotation key words

Displaying items 91-120 of 256 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_139_89
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92086..93330)
DNA (1245bp) protein (415aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
Serine hydroxymethyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TY86_ALIDB rbh
SCNpilot_solid_1_scaffold_139_90
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93535..94362)
DNA (828bp) protein (276aa)
lytic transglycosylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000367C3E2 rbh
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:GAD21339.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
lytic transglycosylase catalytic subunit
SCNpilot_solid_1_scaffold_139_91
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95077..98742
DNA (3666bp) protein (1222aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY88_ALIDB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84502.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
SCNpilot_solid_1_scaffold_139_92
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98860..101487
DNA (2628bp) protein (876aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W6H9_ACISJ rbh
Uncharacterized protein {ECO:0000313|EMBL:KJA08870.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_solid_1_scaffold_139_trna_5
unknown

Not on your lists

comp(101568..101649)
DNA (82bp)
transferRNA
SCNpilot_solid_1_scaffold_139_93
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101662..103824
DNA (2163bp) protein (721aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=596153 species="Bacteria; Proteobacteria; Beta
Ribonuclease R n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8Z5_ALIDK rbh
ribonuclease r
SCNpilot_solid_1_scaffold_139_94
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103824..104579
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8Z6_ALIDK rbh
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEB84505.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Al
SCNpilot_solid_1_scaffold_139_95
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104584..105312
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C3B40 rbh
Cytochrome c553 {ECO:0000313|EMBL:GAD21931.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cytochrome c553-like protein
SCNpilot_solid_1_scaffold_139_96
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105309..106592
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003611FFF rbh
Cytochrome c, mono-and diheme variants {ECO:0000313|EMBL:GAD21932.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidov
class I cytochrome c
SCNpilot_solid_1_scaffold_139_97
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106531..106959
DNA (429bp) protein (143aa)
Thioredoxin domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY94_ALIDB
thioredoxin domain-containing protein
Thioredoxin domain-containing protein {ECO:0000313|EMBL:AEB84508.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
SCNpilot_solid_1_scaffold_139_98
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107126..107695
DNA (570bp) protein (190aa)
UPI0003AB3AEF related cluster n=1 Tax=unknown RepID=UPI0003AB3AEF
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
hypothetical protein
SCNpilot_solid_1_scaffold_139_99
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107767..109254
DNA (1488bp) protein (496aa)
peptidase M54 n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036BC69C rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovor
NusA antitermination factor
SCNpilot_solid_1_scaffold_139_100
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109251..112082
DNA (2832bp) protein (944aa)
Translation initiation factor IF-2 n=2 Tax=Alicycliphilus denitrificans RepID=E8TY97_ALIDB rbh
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
SCNpilot_solid_1_scaffold_139_101
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112146..112460
DNA (315bp) protein (105aa)
Ribosome-binding factor A n=1 Tax=Acidovorax sp. (strain JS42) RepID=RBFA_ACISJ
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (
SCNpilot_solid_1_scaffold_139_102
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112457..113428
DNA (972bp) protein (324aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036728DB
tRNA pseudouridine synthase B
SCNpilot_solid_1_scaffold_139_103
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113425..115260
DNA (1836bp) protein (612aa)
GTP-binding protein TypA n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8Z1_ACISJ
GTP-binding protein TypA
GTP-binding protein TypA {ECO:0000313|EMBL:ABM42716.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strai
SCNpilot_solid_1_scaffold_139_104
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115281..116366
DNA (1086bp) protein (362aa)
3-hydroxyisobutyryl-CoA hydrolase (EC:4.2.1.17)
3-hydroxyisobutyryl-CoA hydrolase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV96_9BURK rbh
3-hydroxyisobutyryl-CoA hydrolase {ECO:0000313|EMBL:KJA09512.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax te
SCNpilot_solid_1_scaffold_139_105
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116432..116986
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LL54_RUEPO
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_solid_1_scaffold_139_106
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116995..117468)
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7A5_ACIAP
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
SCNpilot_solid_1_scaffold_139_107
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117551..117991
DNA (441bp) protein (147aa)
cyclase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D84DD
Cyclase/dehydrase {ECO:0000313|EMBL:GAD21945.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cyclase/dehydrase
SCNpilot_solid_1_scaffold_139_108
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117984..118292
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CFB70
UPF0125 protein AVS7_01706 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
hypothetical protein
SCNpilot_solid_1_scaffold_139_109
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118302..118880)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8Y2_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM42707.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
SCNpilot_solid_1_scaffold_139_110
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119031..120506
DNA (1476bp) protein (492aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.37)
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Acidovorax RepID=A1W8Y1_ACISJ rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
SCNpilot_solid_1_scaffold_139_111
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120583..122202
DNA (1620bp) protein (540aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase large subunit (EC:6.3.5.2)
GMP synthase n=1 Tax=Acidovorax radicis RepID=UPI0002376262 rbh
SCNpilot_solid_1_scaffold_139_112
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122262..123416)
DNA (1155bp) protein (385aa)
Arginase/agmatinase/formiminoglutamase id=12494314 bin=THIO_HI species=Sphingobium sp. HDIP04 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Arginase {ECO:0000313|EMBL:KGJ10086.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus v
Arginase/agmatinase/formiminoglutamase
SCNpilot_solid_1_scaffold_139_113
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123725..124096
DNA (372bp) protein (124aa)
Integrase n=1 Tax=Enterobacter cloacae EC_38VIM1 RepID=S9Y198_ENTCL
Integrase {ECO:0000313|EMBL:EPY96030.1}; TaxID=1334630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" sour
Phage integrase
SCNpilot_solid_1_scaffold_139_114
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124135..125259
DNA (1125bp) protein (375aa)
FAD dependent oxidoreductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7T0_ACISJ rbh
FAD dependent oxidoreductase family protein {ECO:0000313|EMBL:KFJ13205.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delfti
FAD dependent oxidoreductase
SCNpilot_solid_1_scaffold_139_115
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125316..126425
DNA (1110bp) protein (370aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YD7_RHOFD
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:BAO28853.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="S
SCNpilot_solid_1_scaffold_139_116
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126495..127196
DNA (702bp) protein (234aa)
Tripartite ATP-independent periplasmic transporter, DctQ component n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QT8_RHOFD rbh
tripartite ATP-independent periplasmic transporter DctQ; K11689 C4-dicarboxylate transporter, DctQ subunit Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_solid_1_scaffold_139_117
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127193..128476
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47BR0_DECAR rbh
TRAP dicarboxylate transporter, DctM subunit
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:AAZ47721.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechlo
Displaying items 91-120 of 256 in total

View Taxonomy