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SCNpilot_solid_1_scaffold_1

Search features with annotation key words

Displaying items 241-270 of 493 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_1_240
unknown

Not on your lists

234472..234684
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_1_241
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

234783..235814
DNA (1032bp) protein (344aa)
Putative uncharacterized protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IVB3_HERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ63852.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum s
SCNpilot_solid_1_scaffold_1_242
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(236355..236675)
DNA (321bp) protein (107aa)
Uncharacterized protein n=3 Tax=Alcaligenes RepID=J0B957_ALCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23833.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_1_243
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

236883..237113
DNA (231bp) protein (77aa)
Putative prepilin protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUM9_PUSST
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CDM24371.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella
SCNpilot_solid_1_scaffold_1_244
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237115..238416
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU71_PUSST rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM24372.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_1_245
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238418..239137
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D83DE9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24373.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_1_246
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239134..239871
DNA (738bp) protein (246aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24374.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_1_247
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239868..240914
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DD5443
putative secretory protein rbh
Putative secretory protein {ECO:0000313|EMBL:CDM24375.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella
SCNpilot_solid_1_scaffold_1_248
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

240911..242311
DNA (1401bp) protein (467aa)
Putative outer membrane protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU67_PUSST rbh
Type II/IV secretion system secretin RcpA/CpaC rbh
Type II/IV secretion system secretin RcpA/CpaC {ECO:0000313|EMBL:CDM24376.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" so
SCNpilot_solid_1_scaffold_1_249
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

242308..244257
DNA (1950bp) protein (650aa)
General secretion pathway ATPase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UDA1_ADVKW rbh
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily rbh
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily {ECO:0000313|EMBL:CDM24379.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalige
SCNpilot_solid_1_scaffold_1_250
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244239..245087
DNA (849bp) protein (283aa)
Type II secretion system protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU65_PUSST
Flp pilus assembly protein TadB rbh
Flp pilus assembly protein TadB {ECO:0000313|EMBL:CDM24380.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellan
SCNpilot_solid_1_scaffold_1_251
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

245125..245988
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU64_PUSST
Type II/IV secretion system protein TadC rbh
Type II/IV secretion system protein TadC {ECO:0000313|EMBL:CDM24381.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="
SCNpilot_solid_1_scaffold_1_252
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(246342..247121)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU55_PUSST
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM24383.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_1_253
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(247118..248098)
DNA (981bp) protein (327aa)
Homoserine kinase (EC:2.7.1.39) rbh
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|
Homoserine kinase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IT64_BORPD rbh
SCNpilot_solid_1_scaffold_1_254
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

248193..249245
DNA (1053bp) protein (351aa)
tRNA-dihydrouridine synthase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T503_ALCXX rbh
tRNA dihydrouridine synthase A rbh
tRNA dihydrouridine synthase A {ECO:0000313|EMBL:CDM24385.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellani
SCNpilot_solid_1_scaffold_1_255
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249191..249658)
DNA (468bp) protein (156aa)
Inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:CDM24386.1}; EC=1.1.1.205 {ECO:0000313|EMBL:CDM24386.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UWN9_ALCFA
SCNpilot_solid_1_scaffold_1_256
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249728..250978)
DNA (1251bp) protein (417aa)
UPF0761 membrane protein PT7_1297 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU48_PUSST rbh
Ribonuclease BN rbh
UPF0761 membrane protein BN940_09636 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="
SCNpilot_solid_1_scaffold_1_257
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

251017..251388
DNA (372bp) protein (124aa)
Putative membrane protein n=8 Tax=Bordetella RepID=K0MH12_BORPB
Probable transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:CDM24388.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellani
SCNpilot_solid_1_scaffold_1_258
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

251400..252914
DNA (1515bp) protein (505aa)
UPF0061 protein PT7_1295 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU46_PUSST rbh
Selenoprotein O rbh
UPF0061 protein BN940_09646 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellan
SCNpilot_solid_1_scaffold_1_259
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252973..254031
DNA (1059bp) protein (353aa)
Chorismate synthase (EC:4.2.3.5) rbh
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XX50_ALCXX rbh
SCNpilot_solid_1_scaffold_1_260
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254028..254885
DNA (858bp) protein (286aa)
Putative exported peptidase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KYK9_BORA1 rbh
Zn-dependent protease rbh
Zn-dependent protease {ECO:0000313|EMBL:CDM24396.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defr
SCNpilot_solid_1_scaffold_1_261
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255096..256499
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33) rbh
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM i
3-isopropylmalate dehydratase large subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU42_PUSST rbh
SCNpilot_solid_1_scaffold_1_262
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

256513..257169
DNA (657bp) protein (219aa)
3-isopropylmalate dehydratase small subunit (EC:4.2.1.33) rbh
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CDM24399.1}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CDM24399.1};; Alpha-IPM isome
3-isopropylmalate dehydratase small subunit n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0UXM0_ALCFA rbh
SCNpilot_solid_1_scaffold_1_263
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257263..258339
DNA (1077bp) protein (359aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85) rbh
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU40_PUSST rbh
SCNpilot_solid_1_scaffold_1_264
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258415..259509
DNA (1095bp) protein (365aa)
Aspartate-semialdehyde dehydrogenase (EC:1.2.1.11) rbh
Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501, ECO:0000313|EMBL:CDM24401.1}; EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501, ECO:0000313|EMBL:CDM24401.1};; TaxID=1437824 species="Bac
Aspartate-semialdehyde dehydrogenase n=1 Tax=Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) RepID=J7RDK6_BORP1
SCNpilot_solid_1_scaffold_1_265
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

259509..261140
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EE3657 rbh
Collagen triple helix repeat rbh
Collagen triple helix repeat {ECO:0000313|EMBL:CDM24402.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
SCNpilot_solid_1_scaffold_1_266
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261147..261968
DNA (822bp) protein (274aa)
tRNA pseudouridine synthase A (EC:4.2.1.70) rbh
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:CDM24403.1}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rul
tRNA pseudouridine synthase A n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU37_PUSST rbh
SCNpilot_solid_1_scaffold_1_267
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262140..262754
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU36_PUSST
TRAP dicarboxylate transporter, DctQ subunit rbh
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:CDM24404.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_1_268
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262757..264421
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU35_PUSST rbh
TRAP dicarboxylate transporter, DctM subunit rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:CDM24405.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_1_269
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264421..265092
DNA (672bp) protein (224aa)
Phosphoribosylanthranilate isomerase (EC:5.3.1.24) rbh
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GU34_PUSST
Displaying items 241-270 of 493 in total

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