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SCNpilot_solid_1_scaffold_4

Search features with annotation key words

Displaying items 31-60 of 402 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_4_31
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33678..34952)
DNA (1275bp) protein (425aa)
Protein DctM2 n=1 Tax=Thauera sp. 63 RepID=N6YC00_9RHOO rbh
Protein DctM2 {ECO:0000313|EMBL:ENO79698.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
TRAP dicarboxylate transporter, DctM subunit
SCNpilot_solid_1_scaffold_4_32
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35000..35512)
DNA (513bp) protein (171aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Thauera sp. 63 RepID=N6YI41_9RHOO
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ENO79699.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thau
Tripartite ATP-independent periplasmic transporter DctQ component
SCNpilot_solid_1_scaffold_4_33
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35538..36533)
DNA (996bp) protein (332aa)
C4-dicarboxylate-binding periplasmic protein n=1 Tax=Thauera sp. 63 RepID=N6XJZ5_9RHOO rbh
C4-dicarboxylate-binding periplasmic protein {ECO:0000313|EMBL:ENO79700.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauer
TRAP dicarboxylate transporter, DctP subunit
SCNpilot_solid_1_scaffold_4_34
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36600..37997)
DNA (1398bp) protein (466aa)
CadN n=1 Tax=Thauera sp. 63 RepID=N6XD59_9RHOO rbh
CadN {ECO:0000313|EMBL:ENO79701.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Amidase
SCNpilot_solid_1_scaffold_4_35
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38162..39085
DNA (924bp) protein (308aa)
LysR family transcriptional regulator n=1 Tax=Thauera sp. 63 RepID=N6YBB8_9RHOO rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO79702.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 6
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme
SCNpilot_solid_1_scaffold_4_36
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39150..41153
DNA (2004bp) protein (668aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8H7_ALIDK
Diguanylate cyclase {ECO:0000313|EMBL:GAO25345.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_solid_1_scaffold_4_37
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41157..41960)
DNA (804bp) protein (268aa)
Glycerol-3-phosphat transport system, permease component n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNC9_PUSST rbh
glycerol-3-phosphate transport system permease rbh
Glycerol-3-phosphat transport system, permease component {ECO:0000313|EMBL:AEC21596.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimon
SCNpilot_solid_1_scaffold_4_38
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41957..42820)
DNA (864bp) protein (288aa)
Multiple sugar ABC transporter,membrane-spanning permease protein MsmF n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XVW0_ALCXX rbh
Multiple sugar ABC transporter,membrane-spanning permease protein MsmF
ABC transporter, permease protein {ECO:0000313|EMBL:KCV60159.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
SCNpilot_solid_1_scaffold_4_39
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42849..44144)
DNA (1296bp) protein (432aa)
Glycerol-3-phosphate-binding periplasmic protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GND1_PUSST rbh
glycerol-3-phosphate-binding periplasmic protein_ rbh
Glycerol-3-phosphate-binding periplasmic protein {ECO:0000313|EMBL:AEC21598.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" so
SCNpilot_solid_1_scaffold_4_40
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44160..45212)
DNA (1053bp) protein (351aa)
Putative sugar ABC transporter, ATP-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GND2_PUSST rbh
sugar ABC transporter ATP-binding protein
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEC21599.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;"
SCNpilot_solid_1_scaffold_4_41
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45230..46018)
DNA (789bp) protein (263aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GND3_PUSST
cAMP phosphodiesterase
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase
SCNpilot_solid_1_scaffold_4_42
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46012..46866)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI00037E9040 rbh
HAD hydrolase, family IIB {ECO:0000313|EMBL:KCB40850.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5
HAD hydrolase, IIB family protein
SCNpilot_solid_1_scaffold_4_43
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46959..47792)
DNA (834bp) protein (278aa)
Phosphonoacetaldehyde hydrolase {ECO:0000256|HAMAP-Rule:MF_01375}; Short=Phosphonatase {ECO:0000256|HAMAP-Rule:MF_01375};; EC=3.11.1.1 {ECO:0000256|HAMAP-Rule:MF_01375};; Phosphonoacetaldehyde phospho
phosphonoacetaldehyde hydrolase (EC:3.11.1.1)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000378C2D7 rbh
SCNpilot_solid_1_scaffold_4_44
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47779..48924)
DNA (1146bp) protein (382aa)
2-aminoethylphosphonate--pyruvate transaminase {ECO:0000256|HAMAP-Rule:MF_01376}; EC=2.6.1.37 {ECO:0000256|HAMAP-Rule:MF_01376};; 2-aminoethylphosphonate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01
phnW1; 2-aminoethylphosphonate--pyruvate transaminase (EC:2.6.1.37)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000371EA1F rbh
SCNpilot_solid_1_scaffold_4_45
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49043..50488)
DNA (1446bp) protein (482aa)
2-ketoglutaric semialdehyde dehydrogenase (EC:1.2.1.26) rbh
2-ketoglutaric semialdehyde dehydrogenase {ECO:0000313|EMBL:CDM23213.1}; EC=1.2.1.26 {ECO:0000313|EMBL:CDM23213.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
Aldehyde dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ44_9BURK rbh
SCNpilot_solid_1_scaffold_4_46
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50638..51786
DNA (1149bp) protein (383aa)
glucose sorbosone dehydrogenase n=1 Tax=Ochrobactrum anthropi RepID=UPI000287CC1B rbh
PQQ-dependent oxidoreductase, gdhB family rbh
PQQ-dependent oxidoreductase, gdhB family {ECO:0000313|EMBL:CDM23212.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source=
SCNpilot_solid_1_scaffold_4_trna_2
unknown

Not on your lists

comp(51868..51941)
DNA (74bp)
transferRNA
SCNpilot_solid_1_scaffold_4_47
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52006..52932)
DNA (927bp) protein (309aa)
Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl pyrophosphate synthetase (EC:2.5.1.90 2.5.1.29 2.5.1.1 2.5.1.10) rbh
Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl pyrophosphate synthetase {ECO:0000313|EMBL:CDM23203.1}; EC=2.5.1.1 {ECO:0000313|EMBL
Octaprenyl-diphosphate synthase n=6 Tax=Bordetella RepID=J7QGK9_BORP1 rbh
SCNpilot_solid_1_scaffold_4_48
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53053..53919
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR64_PUSST rbh
putative ATP/GTP-binding protein rbh
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:CDM23202.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_4_49
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53963..54964
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4TED6_BORBO rbh
7,8-dihydro-8-oxoguanine-triphosphatase rbh
7,8-dihydro-8-oxoguanine-triphosphatase {ECO:0000313|EMBL:CDM23201.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="C
SCNpilot_solid_1_scaffold_4_50
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54984..56522)
DNA (1539bp) protein (513aa)
Putative outer membrane efflux protein n=2 Tax=Bordetella bronchiseptica RepID=K4QQA8_BORBO rbh
RND efflux system, outer membrane lipoprotein, NodT family rbh
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:CDM23200.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castella
SCNpilot_solid_1_scaffold_4_51
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56515..59619)
DNA (3105bp) protein (1035aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR61_PUSST rbh
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:CDM23199.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcal
Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA rbh
SCNpilot_solid_1_scaffold_4_52
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59616..62699)
DNA (3084bp) protein (1028aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR60_PUSST rbh
Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA rbh
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:CDM23198.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcal
SCNpilot_solid_1_scaffold_4_53
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62696..63976)
DNA (1281bp) protein (427aa)
Multidrug efflux system inner membrane protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUM8_BORA1 rbh
Probable Co/Zn/Cd efflux system membrane fusion protein rbh
Probable Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:CDM23197.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellanie
SCNpilot_solid_1_scaffold_4_54
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63988..64740)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036BBD56 rbh
hypothetical protein rbh
Cell division protein ZapD {ECO:0000256|HAMAP-Rule:MF_01092, ECO:0000256|SAAS:SAAS00004483}; Z ring-associated protein D {ECO:0000256|HAMAP-Rule:MF_01092}; TaxID=1437824 species="Bacteria; Proteobacte
SCNpilot_solid_1_scaffold_4_55
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64753..65385)
DNA (633bp) protein (211aa)
Dephospho-CoA kinase (EC:2.7.1.24) rbh
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CDM23195.1}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CDM23195.1};; Dephosphocoenzyme A kinase {ECO:000025
Dephospho-CoA kinase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I1I5_BORPD
SCNpilot_solid_1_scaffold_4_56
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65465..66169)
DNA (705bp) protein (235aa)
Type II secretory pathway prepilin signal peptidase n=1 Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B4R7_PELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23194.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_4_57
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66241..66906
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B9W7_ALCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM23193.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_4_58
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66868..67221)
DNA (354bp) protein (118aa)
LuxR family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR53_PUSST
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:AEC21943.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusil
SCNpilot_solid_1_scaffold_4_59
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67343..68197)
DNA (855bp) protein (285aa)
Pantoate--beta-alanine ligase (EC:6.3.2.1) rbh
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000313|EMBL:CDM23191.1};; Pantoate--beta-alani
Pantothenate synthetase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR52_PUSST rbh
Displaying items 31-60 of 402 in total

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