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SCNpilot_solid_1_scaffold_2956

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_2956_1
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..284
DNA (282bp) protein (94aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" sou
ATPase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000371A109
signal transduction histidine kinase
SCNpilot_solid_1_scaffold_2956_2
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(297..545)
DNA (249bp) protein (83aa)
Transcriptional regulator WhiB n=1 Tax=Microbacterium sp. TS-1 RepID=U2YYM3_9MICO
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;
regulatory protein
SCNpilot_solid_1_scaffold_2956_3
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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810..1253
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F0223D
Histidine kinase {ECO:0000313|EMBL:KHK98887.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
signal transduction histidine kinase
SCNpilot_solid_1_scaffold_2956_4
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1256..1723)
DNA (468bp) protein (156aa)
peroxiredoxin n=1 Tax=Microbacterium sp. B19 RepID=UPI0003467744
Peroxiredoxin {ECO:0000313|EMBL:KHK98886.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
bcp; peroxiredoxin
SCNpilot_solid_1_scaffold_2956_5
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2006..3088)
DNA (1083bp) protein (361aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteria
ribosome small subunit-dependent GTPase A n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003621DAE rbh
GTPase
SCNpilot_solid_1_scaffold_2956_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3075..4442)
DNA (1368bp) protein (456aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031C5ECD rbh
5-enolpyruvylshikimate-3-phosphate synthase
SCNpilot_solid_1_scaffold_2956_7
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4479..5129
DNA (651bp) protein (217aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NBL4_MICTS rbh
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:KEP75693.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
SCNpilot_solid_1_scaffold_2956_8
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5126..5368
DNA (243bp) protein (81aa)
alpha-ketoglutarate decarboxylase n=1 Tax=Microbacterium yannicii RepID=UPI0002E79144
transmembrane transcriptional regulator
Predicted transmembrane transcriptional regulator {ECO:0000313|EMBL:BAJ73473.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacter
SCNpilot_solid_1_scaffold_2956_9
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5414..6316)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036F875B rbh
Diacylglycerol kinase {ECO:0000313|EMBL:KIC58276.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
diacylglycerol kinase
SCNpilot_solid_1_scaffold_2956_10
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6313..7944)
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378EF5E rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD56190.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
SCNpilot_solid_1_scaffold_2956_11
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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8000..8563
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F6D6D3
Uncharacterized protein {ECO:0000313|EMBL:KJS56213.1}; TaxID=1615590 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp.
TetR family transcriptional regulator
SCNpilot_solid_1_scaffold_2956_12
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8560..10101
DNA (1542bp) protein (514aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardi
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000369D605 rbh
Glycerol-3-phosphate dehydrogenase 1
SCNpilot_solid_1_scaffold_2956_13
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10145..10369
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037564E3
Inner membrane protein YjeH {ECO:0000313|EMBL:KJL27232.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
spore germination family protein
Displaying 13 items

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