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scnpilot_solids1_trim150_scaffold_5346

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_5346_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..588)
DNA (588bp) protein (196aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV09_9GAMM
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA polymerase, sigma 70 subunit, RpoD
scnpilot_solids1_trim150_scaffold_5346_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(772..1155)
DNA (384bp) protein (128aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS1_9GAMM
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma 70 subunit, RpoD
scnpilot_solids1_trim150_scaffold_5346_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1194..1727)
DNA (534bp) protein (178aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLN5_9GAMM
D-tyrosyl-tRNA(Tyr) deacylase
scnpilot_solids1_trim150_scaffold_5346_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1811..2704
DNA (894bp) protein (298aa)
Lauroyl/myristoyl acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCB1_9GAMM
Lauroyl/myristoyl acyltransferase
Lauroyl/myristoyl acyltransferase {ECO:0000313|EMBL:AGG87407.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_5346_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2769..3092)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGP2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98633.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_5346_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3103..4539)
DNA (1437bp) protein (479aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIN1_9GAMM
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG90764.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_5346_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4853..5884)
DNA (1032bp) protein (344aa)
CDP-glycerol glycerophosphotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000348D84D
glycosyl/glycerophosphate transferase, teichoic acid biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_5346_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5881..6609)
DNA (729bp) protein (243aa)
Glycosyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NL07_9GAMM
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AGG90762.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_5346_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6910..7803
DNA (894bp) protein (298aa)
Two-domain glycosyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN6_9GAMM
glycosyl transferase
Two-domain glycosyltransferase {ECO:0000313|EMBL:EIL98627.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_5346_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7824..9104)
DNA (1281bp) protein (427aa)
RfaL protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLP2_9GAMM
RfaL protein {ECO:0000313|EMBL:EIL88133.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
lipid A core-O-antigen ligase-like enyme
scnpilot_solids1_trim150_scaffold_5346_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9169..10461)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98624.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
Displaying 11 items

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