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scnpilot_solids1_trim150_scaffold_150

Search features with annotation key words

Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_150_31
unknown

Not on your lists

comp(36357..37247)
DNA (891bp) protein (297aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_150_32
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37268..37825)
DNA (558bp) protein (186aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NNB2_9SPHI
RNA polymerase {ECO:0000313|EMBL:AHF15320.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids1_trim150_scaffold_150_33
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(37884..38462)
DNA (579bp) protein (193aa)
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae;
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D9D66
scnpilot_solids1_trim150_scaffold_150_34
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38475..38972)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003764407
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17540.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_150_35
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

39039..40103
DNA (1065bp) protein (355aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035CDC72
scnpilot_solids1_trim150_scaffold_150_36
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


40384..40764
DNA (381bp) protein (127aa)
30S ribosomal protein S12 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU62_CHIPD
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_150_37
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


40815..41282
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Niabella aurantiaca RepID=UPI00035F4F68
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_solids1_trim150_scaffold_150_38
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41381..42088
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L1H8_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE48522.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_solids1_trim150_scaffold_150_39
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(42097..43371)
DNA (1275bp) protein (425aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C4118 rbh
NADH dehydrogenase {ECO:0000313|EMBL:KIO48375.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
scnpilot_solids1_trim150_scaffold_150_40
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

43709..45853
DNA (2145bp) protein (715aa)
Elongation factor G n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNM0_NIAKG rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G rbh
scnpilot_solids1_trim150_scaffold_150_41
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

45986..46426
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B7BB51
Uncharacterized protein {ECO:0000313|EMBL:KIC94088.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids1_trim150_scaffold_150_42
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

46445..47740
DNA (1296bp) protein (432aa)
amidohydrolase (EC:3.5.-.-)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036AD9E9
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
scnpilot_solids1_trim150_scaffold_150_43
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

47752..49869
DNA (2118bp) protein (706aa)
quinoprotein glucose dehydrogenase; K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2] rbh
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036B6761 rbh
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids1_trim150_scaffold_150_44
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(50235..56387)
DNA (6153bp) protein (2051aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJA0_9SPHI
Alpha-2-macroglobulin {ECO:0000313|EMBL:AHF14131.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
alpha-2-macroglobulin domain-containing protein
scnpilot_solids1_trim150_scaffold_150_45
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(56599..57792)
DNA (1194bp) protein (398aa)
PUA domain containing protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] rbh
PUA domain containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THC4_NIAKG rbh
PUA domain containing protein {ECO:0000313|EMBL:AEW01734.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_150_46
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

57909..58478
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003827B0B
protein grpE; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids1_trim150_scaffold_150_47
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

58572..59720
DNA (1149bp) protein (383aa)
Chaperone protein DnaJ n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIC3_NIAKG rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
chaperone protein dnaJ; K03686 molecular chaperone DnaJ rbh
scnpilot_solids1_trim150_scaffold_150_48
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(59787..60962)
DNA (1176bp) protein (392aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG rbh
integral membrane sensor signal transduction histidine kinase rbh
scnpilot_solids1_trim150_scaffold_150_49
unknown

Not on your lists

comp(60925..61110)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_150_50
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

61176..62126
DNA (951bp) protein (317aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X0_NIAKG
Glycosyl transferase family 2 {ECO:0000313|EMBL:KIC93119.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
family 2 glycosyl transferase
scnpilot_solids1_trim150_scaffold_150_51
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

62172..62375
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF11_CHIPD">RepID=C7PF11_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59738.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_150_trna_1
unknown

Not on your lists

62448..62520
DNA (73bp)
transferRNA Gly
scnpilot_solids1_trim150_scaffold_150_trna_2
unknown

Not on your lists

62572..62657
DNA (86bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_150_52
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(63132..63377)
DNA (246bp) protein (82aa)
Heavy metal transport/detoxification protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GU60_9BACT
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:CCH57661.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_150_53
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(63491..64039)
DNA (549bp) protein (183aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPH4_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU62384.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_150_54
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

64236..64775
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000375DE41
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADZ81284.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_solids1_trim150_scaffold_150_55
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

64742..67108
DNA (2367bp) protein (789aa)
copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Lead, cadmium, zinc and mercury transporting ATPase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JRT6_9BACT rbh
Copper-transporting P-type ATPase CopA {ECO:0000313|EMBL:GAO43976.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids1_trim150_scaffold_150_56
unknown

Not on your lists

67463..67657
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_150_57
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

67696..69192
DNA (1497bp) protein (499aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC93972.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids1_trim150_scaffold_150_58
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

69360..70226
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MP05_9SPHI
Cation transporter {ECO:0000313|EMBL:KFF25689.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium vrystaatense.;"
RND family efflux transporter, MFP subunit
Displaying items 31-60 of 61 in total

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