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scnpilot_solids1_trim150_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_105_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1809)
DNA (1809bp) protein (603aa)
RNA polymerase sigma factor RpoD n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCJ4_ALIDK rbh
RNA polymerase sigma-710 subunit RpoD; K03086 RNA polymerase primary sigma factor rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_105_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2087..3982)
DNA (1896bp) protein (632aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-] rbh
DNA primase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365925F rbh
scnpilot_solids1_trim150_scaffold_105_3
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4069..5076
DNA (1008bp) protein (336aa)
AraC family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002376256 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KDP84767.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
AraC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_105_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5322..6515
DNA (1194bp) protein (398aa)
1,4-butanediol diacrylate esterase n=1 Tax=Acidovorax radicis RepID=UPI0002376257 rbh
1,4-butanediol diacrylate esterase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_solids1_trim150_scaffold_105_5
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6542..7423
DNA (882bp) protein (294aa)
Putative transcriptional regulator n=1 Tax=Thauera sp. 27 RepID=N6YGR0_9RHOO rbh
Putative transcriptional regulator {ECO:0000313|EMBL:ENO81348.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_105_6
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7645..9306
DNA (1662bp) protein (554aa)
Phenylacetone monooxygenase {ECO:0000313|EMBL:EWS58467.1}; EC=1.14.13.92 {ECO:0000313|EMBL:EWS58467.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
cyclohexanone monooxygenase n=1 Tax=Acidovorax avenae RepID=UPI0002F4A093 rbh
steroid monooxygenase rbh
scnpilot_solids1_trim150_scaffold_105_7
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9357..10403
DNA (1047bp) protein (349aa)
Homoserine O-acetyltransferase {ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00276255};; EC=2.3.1.31 {ECO:0000256|SAAS:SAAS00070942};; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31] rbh
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6YG66_9RHOO rbh
scnpilot_solids1_trim150_scaffold_105_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10651..12294
DNA (1644bp) protein (548aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCY7_ACIET rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACM33919.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_105_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12284..13120)
DNA (837bp) protein (279aa)
Redoxin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J4_ALIDB
Redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:ADU99929.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_105_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13204..13512
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHJ1_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM32896.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_105_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13540..14976
DNA (1437bp) protein (479aa)
RNA methyltransferase, trma family; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0K1_ALIDB rbh
scnpilot_solids1_trim150_scaffold_105_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14983..15390)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRP7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00261.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_105_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15451..16173)
DNA (723bp) protein (241aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FC0D6 rbh
Integral membrane protein, interacts with FtsH {ECO:0000313|EMBL:GAD22172.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K06890 rbh
scnpilot_solids1_trim150_scaffold_105_14
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16331..16738
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AVX0_DELSC
Uncharacterized protein {ECO:0000313|EMBL:EZP57057.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_105_15
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16931..17506
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SEX6_NOCSJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL80361.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids1_trim150_scaffold_105_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17560..17970)
DNA (411bp) protein (137aa)
biopolymer transporter ExbD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BCE3F
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:GAD22169.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
scnpilot_solids1_trim150_scaffold_105_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17975..18691)
DNA (717bp) protein (239aa)
ExbB n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E62AC
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:GAD22168.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
mota/tolq/exbb proton channel; K03561 biopolymer transport protein ExbB
scnpilot_solids1_trim150_scaffold_105_18
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18701..19453)
DNA (753bp) protein (251aa)
Outer membrane transport energization protein TonB n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TSD3_ACIAC rbh
TonB family protein; K03832 periplasmic protein TonB rbh
Outer membrane transport energization protein TonB {ECO:0000313|EMBL:ABM33871.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_solids1_trim150_scaffold_105_19
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19536..19760)
DNA (225bp) protein (75aa)
Bacterioferritin-associated ferredoxin n=1 Tax=Acidovorax sp. CF316 RepID=J0KDN2_9BURK
bfd domain-containing protein (2fe-2S)-binding domain-containing protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_solids1_trim150_scaffold_105_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19894..20181)
DNA (288bp) protein (96aa)
Swib/Mdm2 n=4 Tax=Comamonas testosteroni RepID=D0J192_COMT2
Swib/Mdm2
Swib/Mdm2 {ECO:0000313|EMBL:EFI59439.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
scnpilot_solids1_trim150_scaffold_105_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20382..20897
DNA (516bp) protein (172aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004338};; EC=4.1.3.17 {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993};; Oxaloacetate decarboxylase {ECO:0000256|RuleBase:RU004338}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter
Regulator of ribonuclease activity A n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHX5_ACIET
ribonuclease activity regulator protein rraa; K02553 regulator of ribonuclease activity A
scnpilot_solids1_trim150_scaffold_105_22
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20863..21819)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHX6_ACIET rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM32908.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_105_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21816..23744)
DNA (1929bp) protein (643aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380D8FD rbh
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
tRNA u-34 5-methylaminomethyl-2-thiouridine biosynthesis protein mnmc rbh
scnpilot_solids1_trim150_scaffold_105_24
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23751..24758)
DNA (1008bp) protein (336aa)
d-isomer specific 2-hydroxyacid dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJ48_ACIET rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACM33186.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_105_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25001..26698
DNA (1698bp) protein (566aa)
long-chain-fatty-acid--CoA ligase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
long-chain fatty acid--CoA ligase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000373863F rbh
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II {ECO:0000313|EMBL:GAD24182.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_105_26
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26750..28153)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI000361F740
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
scnpilot_solids1_trim150_scaffold_105_27
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28401..28679
DNA (279bp) protein (93aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X8M4_OXAFO
plasmid maintenance system killer protein; K07334 proteic killer suppression protein
Tax=CG_Rhodof_04
scnpilot_solids1_trim150_scaffold_105_28
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28692..29003
DNA (312bp) protein (104aa)
Possible Plasmid maintenance system antidote protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKZ6_THIDA
plasmid maintenance system antidote protein
Tax=CG_Rhodof_04
scnpilot_solids1_trim150_scaffold_105_29
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29017..30681
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Thauera sp. 28 RepID=N6ZAH6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KEZ75722.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
scnpilot_solids1_trim150_scaffold_105_30
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30694..30933)
DNA (240bp) protein (80aa)
Helix-turn-helix domain protein n=2 Tax=Comamonadaceae RepID=A1W4L1_ACISJ
helix-turn-helix domain-containing protein; K07726 putative transcriptional regulator
Helix-turn-helix domain protein {ECO:0000313|EMBL:ABM56253.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 1-30 of 141 in total

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