ggKbase home page

scnpilot_solids1_trim150_scaffold_1143

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1143_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..99
DNA (99bp) protein (33aa)
Elongation factor Tu 1 n=6 Tax=Xanthomonas RepID=EFTU1_XANC8
tuf; translation elongation factor Tu
Elongation factor Tu 1 {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu 1 {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain B100).;"
scnpilot_solids1_trim150_scaffold_1143_2
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

516..3248
DNA (2733bp) protein (911aa)
Peptidase M14 carboxypeptidase A n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIQ4_SPILD
peptidase M14 carboxypeptidase A
Peptidase M14 carboxypeptidase A {ECO:0000313|EMBL:ADB39980.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_solids1_trim150_scaffold_1143_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3649..3960
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=11 Tax=Stenotrophomonas RepID=RS10_STRM5
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_1143_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3972..4622
DNA (651bp) protein (217aa)
50S ribosomal protein L3 n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BES2_9XANT rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
scnpilot_solids1_trim150_scaffold_1143_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4635..5240
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=2 Tax=Stenotrophomonas maltophilia RepID=G0JZ44_STEMA rbh
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_1143_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5237..5536
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=9 Tax=Stenotrophomonas RepID=RL23_STRM5
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
scnpilot_solids1_trim150_scaffold_1143_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5547..6374
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6E719 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
scnpilot_solids1_trim150_scaffold_1143_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6381..6650
DNA (270bp) protein (90aa)
30S ribosomal protein S19 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F82609
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
scnpilot_solids1_trim150_scaffold_1143_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6663..6998
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=2 Tax=Pseudoxanthomonas RepID=E6WVG5_PSEUU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
scnpilot_solids1_trim150_scaffold_1143_10
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7001..7735
DNA (735bp) protein (245aa)
30S ribosomal protein S3 n=10 Tax=Xanthomonas RepID=RS3_XANAC rbh
rpsC; Ribosomal protein S3 rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. glycines str. 8ra.;"
scnpilot_solids1_trim150_scaffold_1143_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7741..8154
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=9 Tax=Stenotrophomonas RepID=RL16_STRMK
rplP; 50S ribosomal protein L16p (L10e); K02878 large subunit ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
scnpilot_solids1_trim150_scaffold_1143_12
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8154..8339
DNA (186bp) protein (62aa)
50S ribosomal protein L29 n=13 Tax=Xanthomonas RepID=RL29_XANC5
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
scnpilot_solids1_trim150_scaffold_1143_13
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8351..8620
DNA (270bp) protein (90aa)
30S ribosomal protein S17 n=2 Tax=Xanthomonas RepID=UPI0002F4A151
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
scnpilot_solids1_trim150_scaffold_1143_14
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8633..9001
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SZA5_XANCT
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
rplN; Ribosomal protein L14
scnpilot_solids1_trim150_scaffold_1143_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9018..9335
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031D9D08
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
scnpilot_solids1_trim150_scaffold_1143_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9347..9889
DNA (543bp) protein (181aa)
50S ribosomal protein L5 n=3 Tax=Stenotrophomonas maltophilia RepID=I0KJY8_STEMA rbh
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_1143_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9908..10213
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KF35_STEMA
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
scnpilot_solids1_trim150_scaffold_1143_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10430..10828
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=5 Tax=Stenotrophomonas RepID=RS8_STRMK
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_1143_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10846..11373
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F1FAB8 rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
scnpilot_solids1_trim150_scaffold_1143_20
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11407..11760
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKX9_STRM5
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
scnpilot_solids1_trim150_scaffold_1143_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11921..12463
DNA (543bp) protein (181aa)
30S ribosomal protein S5 n=2 Tax=Stenotrophomonas maltophilia RepID=M5CJJ1_STEMA rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 rbh
scnpilot_solids1_trim150_scaffold_1143_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12456..12647
DNA (192bp) protein (64aa)
50S ribosomal protein L30 n=6 Tax=Stenotrophomonas maltophilia RepID=RL30_STRMK
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_1143_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12654..13097
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=11 Tax=Stenotrophomonas RepID=B2FQK3_STRMK
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
scnpilot_solids1_trim150_scaffold_1143_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13105..14460
DNA (1356bp) protein (452aa)
preprotein translocase subunit SecY n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003178BE8 rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
scnpilot_solids1_trim150_scaffold_1143_25
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14809..15165
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=2 Tax=Xanthomonas RepID=D2UBJ3_XANAP
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
scnpilot_solids1_trim150_scaffold_1143_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15178..15570
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVE8_PSEUU
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1143_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15585..15758
DNA (174bp) protein (58aa)
30S ribosomal protein S4 n=3 Tax=Xanthomonas campestris pv. translucens RepID=K8YZE5_XANCT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
Displaying 27 items

View Taxonomy