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scnpilot_solids1_trim150_scaffold_1526

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1526_1
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..207
DNA (207bp) protein (69aa)
Ribosome maturation factor RimP n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z6C8_XANCT
hypothetical protein; K09748 ribosome maturation factor RimP
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_1526_2
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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211..1707
DNA (1497bp) protein (499aa)
NusA antitermination factor n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU23_PSEUU
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
NusA antitermination factor; K02600 N utilization substance protein A
scnpilot_solids1_trim150_scaffold_1526_3
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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1824..4436
DNA (2613bp) protein (871aa)
Translation initiation factor IF-2 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU22_PSEUU
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
translation initiation factor IF-2; K02519 translation initiation factor IF-2
scnpilot_solids1_trim150_scaffold_1526_4
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4452..4823
DNA (372bp) protein (124aa)
ribosome-binding factor A n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00035F9C8F
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
scnpilot_solids1_trim150_scaffold_1526_5
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4807..5823
DNA (1017bp) protein (339aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonen
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UP63_PSEUP rbh
scnpilot_solids1_trim150_scaffold_1526_6
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5958..6218
DNA (261bp) protein (87aa)
30S ribosomal protein S15 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WU19_PSEUU
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
scnpilot_solids1_trim150_scaffold_1526_7
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6380..8485
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UP61_PSEUP
scnpilot_solids1_trim150_scaffold_1526_8
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8587..9132)
DNA (546bp) protein (182aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
3-hydroxyanthranilate 3,4-dioxygenase; K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UV65_PSEUP
scnpilot_solids1_trim150_scaffold_1526_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9137..9565)
DNA (429bp) protein (143aa)
2-aminomuconate deaminase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F465
2-aminomuconate deaminase {ECO:0000313|EMBL:KGQ20294.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
putative translation initiation inhibitor, yjgF family
scnpilot_solids1_trim150_scaffold_1526_10
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9562..10227)
DNA (666bp) protein (222aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1]
carbonate dehydratase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B55A26 rbh
scnpilot_solids1_trim150_scaffold_1526_11
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10224..11675)
DNA (1452bp) protein (484aa)
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5595C rbh
2-hydroxymuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:KGM57300.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids1_trim150_scaffold_1526_12
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11685..12512)
DNA (828bp) protein (276aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K05522 endonuclease VIII [EC:3.2.2.- 4.2.99.18] rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN46879.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
Endonuclease 8 id=2439155 bin=GWF1_Xanthomonadales_69_6 species=Serratia marcescens genus=Serratia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
scnpilot_solids1_trim150_scaffold_1526_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12517..13302)
DNA (786bp) protein (262aa)
short-chain dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B759DE rbh
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:KGQ20291.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids1_trim150_scaffold_1526_14
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13374..13703)
DNA (330bp) protein (110aa)
phosphoesterase PA-phosphatase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B49716
Phosphoesterase {ECO:0000313|EMBL:KGM55455.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
phosphoesterase PA-phosphatase-like protein
Displaying 14 items

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