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scnpilot_solids1_trim150_scaffold_2733

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2733_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..894
-----------------
DNA (894bp)
protein (298aa)
capsule expression protein KpsF/GutQ; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] rbh
KpsF/GutQ family protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366AAD3 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_2733_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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894..1436
-----------------
DNA (543bp)
protein (181aa)
phosphatase KdsC; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI000366BE69 rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2733_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1483..2055
-----------------
DNA (573bp)
protein (191aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003653CF0 rbh
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2733_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2072..2605
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003683388 rbh
OstA-like family protein; K09774 lipopolysaccharide export system protein LptA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_2733_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2602..3324
-----------------
DNA (723bp)
protein (241aa)
ATPase component ABC-type transport system; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037377E0 rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2733_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3396..4829
-----------------
DNA (1434bp)
protein (478aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor rbh
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037510B5 rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2733_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4988..5323
-----------------
DNA (336bp)
protein (112aa)
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C167F
30S ribosomal protein S30P / sigma 54 modulation protein; K05808 putative sigma-54 modulation protein
Possible Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:AAZ96485.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_2733_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5427..5882
-----------------
DNA (456bp)
protein (152aa)
PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS sugar transporter subunit IIA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003808E85
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2733_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5870..6820
-----------------
DNA (951bp)
protein (317aa)
HPr kinase/phosphorylase (EC:2.7.1.-); K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] rbh
HPr kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036867E7 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_2733_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6822..7658
-----------------
DNA (837bp)
protein (279aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CE7E6 rbh
hypothetical protein; K06958 UPF0042 nucleotide-binding protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_2733_11
unknown

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7658..7735
-----------------
DNA (78bp)
protein (26aa)

This feature has no annotations

Displaying 11 items

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