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scnpilot_solids1_trim150_scaffold_245

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_245_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..256
DNA (255bp) protein (85aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL81_9GAMM
putative sugar kinase
scnpilot_solids1_trim150_scaffold_245_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

302..1231
DNA (930bp) protein (310aa)
5'-nucleotidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W605_9GAMM
5'-nucleotidase {ECO:0000313|EMBL:EIL94896.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
5'-nucleotidase
scnpilot_solids1_trim150_scaffold_245_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1433..2536
DNA (1104bp) protein (368aa)
Glutaryl-CoA dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W610_9GAMM
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:EIL94901.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acyl-CoA dehydrogenase
scnpilot_solids1_trim150_scaffold_245_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2669..4939
DNA (2271bp) protein (757aa)
Transketolase domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W613_9GAMM
Transketolase domain-containing protein {ECO:0000313|EMBL:EIL94904.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
scnpilot_solids1_trim150_scaffold_245_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4956..6656)
DNA (1701bp) protein (567aa)
Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM91_9GAMM
Periplasmic/7TM domain sensor diguanylate cyclase {ECO:0000313|EMBL:EIM00583.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids1_trim150_scaffold_245_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6941..7507
DNA (567bp) protein (189aa)
NADPH-dependent FMN reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTL8_9GAMM
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EIL90559.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
NADPH-dependent FMN reductase domain-containing protein
scnpilot_solids1_trim150_scaffold_245_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7583..11206)
DNA (3624bp) protein (1208aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W615_9GAMM
transcription-repair coupling factor Mfd
scnpilot_solids1_trim150_scaffold_245_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11246..11755)
DNA (510bp) protein (170aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKB3_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL87654.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
starvation-inducible outer membrane lipoprotein
scnpilot_solids1_trim150_scaffold_245_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11889..12785)
DNA (897bp) protein (299aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Rhodanobacter denitrificans RepID=M4NEQ0_9GAMM
protein involved in catabolism of external DNA
scnpilot_solids1_trim150_scaffold_245_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12793..13722)
DNA (930bp) protein (310aa)
Integral membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMC3_9GAMM
Integral membrane protein {ECO:0000313|EMBL:EIM00615.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease, DMT superfamily
scnpilot_solids1_trim150_scaffold_245_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13807..14751)
DNA (945bp) protein (315aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKC0_9GAMM
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:EIL87661.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
scnpilot_solids1_trim150_scaffold_245_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14994..15752
DNA (759bp) protein (253aa)
purine nucleoside phosphorylase (EC:2.4.2.28)
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Purine nucleoside phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR96_9GAMM
scnpilot_solids1_trim150_scaffold_245_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15909..16961
DNA (1053bp) protein (351aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D2M8_MYXXD
Cholesterol oxidase {ECO:0000313|EMBL:KFE61084.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_245_14
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

16975..17886
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J7D5_NOSP7 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACC80870.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
scnpilot_solids1_trim150_scaffold_245_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17883..18968
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUX3_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36319.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
scnpilot_solids1_trim150_scaffold_245_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18965..20512
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000372F855 rbh
Patatin {ECO:0000313|EMBL:AHG91820.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
patatin domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_245_17
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20540..22492
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B1M9_FRADG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH08001.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
scnpilot_solids1_trim150_scaffold_245_18
Xenococcus sp. PCC 7305, Xenococcus, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

22471..24156
DNA (1686bp) protein (562aa)
hypothetical protein; K03333 cholesterol oxidase [EC:1.1.3.6]
Choline dehydrogenase-like flavoprotein n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M1Z4_9CYAN rbh
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:ELS02366.1}; TaxID=102125 species="Bacteria; Cyanobacteria; Pleurocapsales; Xenococcus.;" source="Xenococcus sp. PCC 7305.;"
scnpilot_solids1_trim150_scaffold_245_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24249..24461)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL50_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87941.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_245_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24471..24863)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL49_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87940.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
pspC; DNA-binding transcriptional activator of psp operon
scnpilot_solids1_trim150_scaffold_245_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24867..25139)
DNA (273bp) protein (91aa)
DNA-binding transcriptional activator of psp operon n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL48_9GAMM
DNA-binding transcriptional activator of psp operon {ECO:0000313|EMBL:EIL87939.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
pspC; DNA-binding transcriptional activator of psp operon
scnpilot_solids1_trim150_scaffold_245_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25136..25357)
DNA (222bp) protein (74aa)
DNA-binding transcriptional regulator of psp operon n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL47_9GAMM
DNA-binding transcriptional regulator of psp operon {ECO:0000313|EMBL:EIL87938.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
pspB; DNA-binding transcriptional regulator of psp operon
scnpilot_solids1_trim150_scaffold_245_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25364..26044)
DNA (681bp) protein (227aa)
Phage shock protein A, PspA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL46_9GAMM
Phage shock protein A, PspA {ECO:0000313|EMBL:EIL87937.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
pspA; phage shock protein A; K03969 phage shock protein A
scnpilot_solids1_trim150_scaffold_245_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26280..27329
DNA (1050bp) protein (350aa)
Psp operon transcriptional activator PspF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL45_9GAMM
Psp operon transcriptional activator PspF {ECO:0000313|EMBL:EIL87936.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
pspF; Psp operon transcriptional activator; K03974 psp operon transcriptional activator
scnpilot_solids1_trim150_scaffold_245_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27547..28881
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00030FF050
Hydrolase {ECO:0000313|EMBL:AIF48953.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
amidohydrolase
scnpilot_solids1_trim150_scaffold_245_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28981..29928
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTT9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90630.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_245_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30173..32095)
DNA (1923bp) protein (641aa)
Putative protease with the C-terminal PDZ domain n=1 Tax=Rhodanobacter sp. 115 RepID=I4WMP9_9GAMM rbh
Putative protease with the C-terminal PDZ domain {ECO:0000313|EMBL:EIM00741.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glycyl aminopeptidase
scnpilot_solids1_trim150_scaffold_245_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32366..33427)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D8D4B7
Aldo/keto reductase {ECO:0000313|EMBL:EHK59078.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_245_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33424..33774)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002EBB5D3
Variovorax paradoxus strain MEDvA23 contig_83, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22548.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_245_30
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33774..35072)
DNA (1299bp) protein (433aa)
Major facilitator superfamily (MFS) transporter n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13HD2_BURXL
major facilitator transporter
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Displaying items 1-30 of 48 in total

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