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scnpilot_solids1_trim150_scaffold_1760

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1760_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1716)
DNA (1716bp) protein (572aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Elongation factor 4 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL6_9GAMM
GTP-binding protein LepA
scnpilot_solids1_trim150_scaffold_1760_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1890..2225)
DNA (336bp) protein (112aa)
Periplasmic serine protease, Do/DeqQ family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJV5_9GAMM
periplasmic serine protease, Do/DeqQ family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1760_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2165..3439)
DNA (1275bp) protein (425aa)
Periplasmic serine protease, Do/DeqQ family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR82_9GAMM
periplasmic serine protease, Do/DeqQ family
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:AGG89346.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1760_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3622..4287)
DNA (666bp) protein (222aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL4_9GAMM
Negative regulator of sigma E activity {ECO:0000313|EMBL:EIM01406.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
negative regulator of sigma E activity
scnpilot_solids1_trim150_scaffold_1760_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4284..4892)
DNA (609bp) protein (203aa)
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL3_9GAMM
RNA polymerase, sigma-24 subunit, RpoE
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:AGG89348.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1760_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5241..7310
DNA (2070bp) protein (690aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17)
Putative enoyl-CoA hydratasee n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P9_9GAMM
Putative enoyl-CoA hydratasee {ECO:0000313|EMBL:EIL95140.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1760_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7323..7883)
DNA (561bp) protein (187aa)
Nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P8_9GAMM
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIL95139.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1760_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7922..8137)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F9A340
Uncharacterized protein {ECO:0000313|EMBL:AIF48361.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1760_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8134..9477)
DNA (1344bp) protein (448aa)
Nucleotide sugar dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJW3_9GAMM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EIL87504.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleotide sugar dehydrogenase
scnpilot_solids1_trim150_scaffold_1760_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9687..10445)
DNA (759bp) protein (253aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P5_9GAMM rbh
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids1_trim150_scaffold_1760_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10598..12376)
DNA (1779bp) protein (593aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR72_9GAMM
Kef-type K+ transport system, predicted NAD-binding component
Kef-type K+ transport system, predicted NAD-binding component {ECO:0000313|EMBL:AGG89356.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1760_trna_1
unknown

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12704..12776
DNA (73bp)
transferRNA Ala
scnpilot_solids1_trim150_scaffold_1760_trna_2
unknown

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12787..12866
DNA (80bp)
transferRNA Glu
scnpilot_solids1_trim150_scaffold_1760_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12900..13385)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR71_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1760_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13447..13572)
DNA (126bp) protein (42aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1162282 species="Bacteri
Putative phosphoenolpyruvate synthase regulatory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK3_9GAMM
hypothetical protein
Displaying 15 items

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