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scnpilot_solids1_trim150_scaffold_2453

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2453_1
unknown

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3..125
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2453_2
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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224..1012
DNA (789bp) protein (263aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
enoyl-(acyl carrier protein) reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
enoyl-ACP reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6B5CB rbh
scnpilot_solids1_trim150_scaffold_2453_3
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1164..3131)
DNA (1968bp) protein (656aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
ppiD; peptidyl-prolyl isomerase (EC:5.2.1.8); K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F8AE74
scnpilot_solids1_trim150_scaffold_2453_trna_6
unknown

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comp(3255..3328)
DNA (74bp)
transferRNA Asp
scnpilot_solids1_trim150_scaffold_2453_trna_5
unknown

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comp(3392..3463)
DNA (72bp)
transferRNA Val
scnpilot_solids1_trim150_scaffold_2453_4
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3577..3849)
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein id=2826656 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Transcriptional regulator {ECO:0000313|EMBL:KFN48535.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
scnpilot_solids1_trim150_scaffold_2453_5
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4072..6528)
DNA (2457bp) protein (819aa)
ATP-dependent serine proteinase La; K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
Lon protease n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RTF4_XANCB
scnpilot_solids1_trim150_scaffold_2453_6
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6733..8022)
DNA (1290bp) protein (430aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UBK8_XANAP rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
clpX; ATP-dependent clp protease ATP-binding subunit protein; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX rbh
scnpilot_solids1_trim150_scaffold_2453_7
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8164..8787)
DNA (624bp) protein (208aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUV6_PSEUU
scnpilot_solids1_trim150_scaffold_2453_8
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8821..10113)
DNA (1293bp) protein (431aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
tig; cell division trigger factor (EC:5.2.1.8); K03545 trigger factor
trigger factor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000370280F
scnpilot_solids1_trim150_scaffold_2453_trna_1
unknown

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10382..10455
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_2453_trna_2
unknown

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10492..10565
DNA (74bp)
transferRNA Arg
scnpilot_solids1_trim150_scaffold_2453_trna_3
unknown

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10591..10670
DNA (80bp)
transferRNA His
scnpilot_solids1_trim150_scaffold_2453_trna_4
unknown

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10737..10809
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_2453_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11175..12356
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003AC8E3C rbh
Uncharacterized protein {ECO:0000313|EMBL:EQL42351.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
scnpilot_solids1_trim150_scaffold_2453_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12378..12830
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003AC83CB
Uncharacterized protein {ECO:0000313|EMBL:EQL42352.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
scnpilot_solids1_trim150_scaffold_2453_11
Acinetobacter sp. CIP 70.18, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13121..14140
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Acinetobacter baumannii RepID=K5Q843_ACIBA
Uncharacterized protein {ECO:0000313|EMBL:ENX56030.1}; TaxID=1217700 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. CIP 70.18.;"
scnpilot_solids1_trim150_scaffold_2453_12

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14109..14444
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003754295
Uncharacterized protein {ECO:0000313|EMBL:KKN60817.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
excinuclease ABC subunit C; K07461 putative endonuclease
scnpilot_solids1_trim150_scaffold_2453_13

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comp(14385..15053)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=mine drainage metagenome RepID=T1BB37_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD67072.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying 19 items

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