ggKbase home page

scnpilot_solids1_trim150_scaffold_471

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_471_1
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(3..3974)
DNA (3972bp) protein (1324aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037BAFF3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIJ79068.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
ppsE6; malonyl CoA-acyl carrier protein transacylase
scnpilot_solids1_trim150_scaffold_471_2
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3990..4991)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037A7571
Uncharacterized protein {ECO:0000313|EMBL:KJV26463.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids1_trim150_scaffold_471_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5149..6252)
DNA (1104bp) protein (368aa)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Dyella japonica RepID=UPI0002DF6BC6
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:AIF49152.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NAD/NADP transhydrogenase alpha subunit
scnpilot_solids1_trim150_scaffold_471_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6323..6916
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A5D1B
Nitroreductase {ECO:0000313|EMBL:AHX14324.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6913..7842
DNA (930bp) protein (310aa)
exodeoxyribonuclease IX n=1 Tax=Dyella japonica RepID=UPI0003126DB4
Exodeoxyribonuclease IX {ECO:0000313|EMBL:AIF49155.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
exonuclease
scnpilot_solids1_trim150_scaffold_471_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7839..8402
DNA (564bp) protein (188aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1M5_9GAMM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL93366.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NTP pyrophosphohydrolase
scnpilot_solids1_trim150_scaffold_471_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8404..9303)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EB2491
Beta-lactamase {ECO:0000313|EMBL:AIF49264.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_471_8
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9406..10440)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYF7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV36269.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Protein of unknown function (DUF1625)
scnpilot_solids1_trim150_scaffold_471_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..11319)
DNA (870bp) protein (290aa)
Beta-lactamase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1M7_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL93368.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_471_10

Not on your lists

comp(11671..13110)
DNA (1440bp) protein (480aa)
Protease Do n=4 Tax=mine drainage metagenome RepID=T0Y1C4_9ZZZZ
Protease Do {ECO:0000313|EMBL:EQD28881.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
periplasmic serine protease, Do/DeqQ family
scnpilot_solids1_trim150_scaffold_471_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13280..13945)
DNA (666bp) protein (222aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter denitrificans RepID=I4WR81_9GAMM
negative regulator of sigma E activity
Negative regulator of sigma E activity {ECO:0000313|EMBL:AGG89347.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_471_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13991..14578)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376D47E rbh
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIL95143.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma-24 subunit, RpoE
scnpilot_solids1_trim150_scaffold_471_13
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14766..17063)
DNA (2298bp) protein (766aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031D4275
Diguanylate cyclase {ECO:0000313|EMBL:KJV33230.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids1_trim150_scaffold_471_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17249..19336
DNA (2088bp) protein (696aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17)
Putative enoyl-CoA hydratasee n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL0_9GAMM
Putative enoyl-CoA hydratasee {ECO:0000313|EMBL:EIM01402.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_471_15
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19363..19800)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CLS3_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:KFE70350.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_16
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19823..21634)
DNA (1812bp) protein (604aa)
Transcriptional regulator domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH96_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:KGQ20597.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_17
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21783..23693
DNA (1911bp) protein (637aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00037EACA4
Serine protease {ECO:0000313|EMBL:KGO98333.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
scnpilot_solids1_trim150_scaffold_471_18
unknown

Not on your lists

23735..24241
DNA (507bp) protein (169aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_471_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24319..25188)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY63_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92154.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_20
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

25515..26705
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026A5_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ83164.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
scnpilot_solids1_trim150_scaffold_471_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26775..27308)
DNA (534bp) protein (178aa)
Nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK9_9GAMM
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIM01401.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27311..27526)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01400.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27533..28879)
DNA (1347bp) protein (449aa)
Nucleotide sugar dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJW3_9GAMM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EIL87504.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleotide sugar dehydrogenase
scnpilot_solids1_trim150_scaffold_471_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28991..29935)
DNA (945bp) protein (315aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_471_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30274..33288
DNA (3015bp) protein (1005aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease E n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG6_9GAMM
ribonuclease, Rne/Rng family
scnpilot_solids1_trim150_scaffold_471_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33367..34041)
DNA (675bp) protein (225aa)
histidine kinase n=1 Tax=Dyella japonica RepID=UPI00030665D0
Histidine kinase {ECO:0000313|EMBL:AIF47870.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
two component LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_471_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34065..35195
DNA (1131bp) protein (377aa)
pyridoxal-5'-phosphate-dependent enzyme, beta subunit; K01738 cysteine synthase A [EC:2.5.1.47] rbh
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK00_9GAMM rbh
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit {ECO:0000313|EMBL:EIL87541.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_471_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35292..37376
DNA (2085bp) protein (695aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030A4BA1
Uncharacterized protein {ECO:0000313|EMBL:AIF47511.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_471_29
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37477..38502
DNA (1026bp) protein (342aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP3_9GAMM
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase {ECO:0000313|EMBL:KJV37077.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative TIM-barrel fold metal-dependent hydrolase
scnpilot_solids1_trim150_scaffold_471_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38499..39020
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTP2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88371.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 31 in total

View Taxonomy