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scnpilot_solids1_trim150_scaffold_3038_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3038_curated_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..461)
DNA (459bp) protein (153aa)
Putative conjugal transfer protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTD8_STRMK
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Putative conjugal transfer protein {ECO:0000313|EMBL:CAQ44835.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_3038_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(473..1228)
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV30_ALIDB
p-type conjugative transfer protein trbj
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:ADV00562.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_3038_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1225..3684)
DNA (2460bp) protein (820aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV31_ALIDB
cage, trbe, virb component of type iv transporter system, conserved region protein; K03199 type IV secretion system protein VirB4
CagE, TrbE, VirB component of type IV transporter system, conserved region protein {ECO:0000313|EMBL:ADV00563.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_3038_curated_4
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3694..3966)
DNA (273bp) protein (91aa)
conjugal transfer protein TrbD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381E1AD
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KGM52058.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
trbD1; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
scnpilot_solids1_trim150_scaffold_3038_curated_5
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3963..4349)
DNA (387bp) protein (129aa)
Conjugal transfer protein TrbC n=3 Tax=Comamonadaceae RepID=E8TV33_ALIDB
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2
TrbC/VIRB2 family protein {ECO:0000313|EMBL:KIN88229.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
scnpilot_solids1_trim150_scaffold_3038_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4346..5395)
DNA (1050bp) protein (350aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV34_ALIDB
p-type conjugative transfer atpase trbb; K03196 type IV secretion system protein VirB11
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ADV00566.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_3038_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5392..5856)
DNA (465bp) protein (155aa)
CopG/DNA-binding domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV35_ALIDB
copg/DNA-binding domain-containing protein
CopG/DNA-binding domain-containing protein {ECO:0000313|EMBL:ADV00567.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_3038_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5853..7862)
DNA (2010bp) protein (670aa)
TRAG family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT35_ALIDB
trag family protein; K03205 type IV secretion system protein VirD4
TRAG family protein {ECO:0000313|EMBL:ADU98002.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_3038_curated_9
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8114..8374)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C091_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22007.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
putative lipoprotein
scnpilot_solids1_trim150_scaffold_3038_curated_10
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8374..9297)
DNA (924bp) protein (308aa)
Putative LysR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0C090_9BURK
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:EHL22006.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_3038_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9323..10705)
DNA (1383bp) protein (461aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI3_ALIDB
heavy metal efflux pump, czca family; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ADV00457.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 11 items

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