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scnpilot_solids1_trim150_scaffold_1034_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1034_curated_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..936)
DNA (936bp) protein (312aa)
Protein-export membrane protein SecF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA9_9GAMM
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein translocase subunit secF
scnpilot_solids1_trim150_scaffold_1034_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(943..2820)
DNA (1878bp) protein (626aa)
Protein translocase subunit SecD n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS5_9GAMM
protein-export membrane protein, SecD/SecF family
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1034_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2927..3247)
DNA (321bp) protein (107aa)
Preprotein translocase subunit YajC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF6_9GAMM
Preprotein translocase subunit YajC {ECO:0000313|EMBL:EIL97847.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
preprotein translocase, YajC subunit
scnpilot_solids1_trim150_scaffold_1034_curated_4

Not on your lists

3426..5294
DNA (1869bp) protein (623aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C23F5
Peptidase M61 domain protein {ECO:0000313|EMBL:EQD76675.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycyl aminopeptidase
scnpilot_solids1_trim150_scaffold_1034_curated_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5284..6429)
DNA (1146bp) protein (382aa)
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS3_9GAMM
scnpilot_solids1_trim150_scaffold_1034_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6431..7486)
DNA (1056bp) protein (352aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F0_9GAMM
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
scnpilot_solids1_trim150_scaffold_1034_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7835..9331
DNA (1497bp) protein (499aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:AGG88216.1}; EC=2.6.1.36 {ECO:0000313|EMBL:AGG88216.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKA9_9GAMM
scnpilot_solids1_trim150_scaffold_1034_curated_8
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9474..9788
DNA (315bp) protein (105aa)
phosphate starvation-inducible protein PsiF n=2 Tax=Acidovorax avenae RepID=UPI0003646DF4
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
scnpilot_solids1_trim150_scaffold_1034_curated_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9890..10852)
DNA (963bp) protein (321aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB4_9GAMM
scnpilot_solids1_trim150_scaffold_1034_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10913..12304)
DNA (1392bp) protein (464aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEG7_9GAMM
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIL97858.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
FAD/FMN-dependent dehydrogenase
scnpilot_solids1_trim150_scaffold_1034_curated_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12567..12923)
DNA (357bp) protein (119aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W974_9GAMM
Putative transcriptional regulator {ECO:0000313|EMBL:EIL96015.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_1034_curated_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12904..13203)
DNA (300bp) protein (100aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI0003482EA4
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
integration host factor, alpha subunit
scnpilot_solids1_trim150_scaffold_1034_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13205..15583)
DNA (2379bp) protein (793aa)
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF38_9GAMM
scnpilot_solids1_trim150_scaffold_1034_curated_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15690..16694)
DNA (1005bp) protein (335aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
phenylalanyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034693ED
scnpilot_solids1_trim150_scaffold_1034_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16832..17191)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEH4_9GAMM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L20P
Displaying 15 items

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