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SCNpilot_solid_2_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_68_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

340..1602
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52162.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_68_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1599..2591)
DNA (993bp) protein (331aa)
threo-3-hydroxyaspartate ammonia-lyase (EC:4.3.1.16); K01754 threonine dehydratase [EC:4.3.1.19] rbh
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I3_9BRAD rbh
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:CEG07371.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
SCNpilot_solid_2_scaffold_68_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2685..3485)
DNA (801bp) protein (267aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFI52167.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFI52167.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ThiD (EC:2.7.1.49 2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] rbh
Phosphomethylpyrimidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I7_9BRAD rbh
SCNpilot_solid_2_scaffold_68_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3613..4038
DNA (426bp) protein (142aa)
CHRD domain containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I8_9BRAD
CHRD domain containing protein {ECO:0000313|EMBL:EFI52168.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="
CHRD family protein
SCNpilot_solid_2_scaffold_68_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4069..5598)
DNA (1530bp) protein (510aa)
Integral membrane protein MviN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I9_9BRAD rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2
mviN; virulence factor MviN; K03980 virulence factor rbh
SCNpilot_solid_2_scaffold_68_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5643..6785)
DNA (1143bp) protein (381aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J0_9BRAD rbh
UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase {ECO:0000313|EMBL:CEG07363.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
DegT/DnrJ/EryC1/StrS aminotransferase rbh
SCNpilot_solid_2_scaffold_68_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6824..7816)
DNA (993bp) protein (331aa)
Oxidoreductase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J1_9BRAD rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:EFI52171.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
oxidoreductase rbh
SCNpilot_solid_2_scaffold_68_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7971..9380)
DNA (1410bp) protein (470aa)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:EFI52172.1}; EC=2.7.7.13 {ECO:0000313|EMBL:EFI52172.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphapr
manC2; mannose-1-phosphate guanylyltransferase, mannose-6-phosphate isomerase ManC (EC:2.7.7.13) rbh
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J2_9BRAD rbh
SCNpilot_solid_2_scaffold_68_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9410..10426)
DNA (1017bp) protein (339aa)
NAD-dependent epimerase/dehydratase family; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
NAD-dependent epimerase/dehydratase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J3_9BRAD rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EFI52173.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
SCNpilot_solid_2_scaffold_68_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10577..11533
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52174.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein; K07027 rbh
SCNpilot_solid_2_scaffold_68_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11574..13046)
DNA (1473bp) protein (491aa)
bifunctional protein HldE (EC:2.7.1.- 2.7.7.-); K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] rbh
Bifunctional protein HldE n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J5_9BRAD rbh
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
SCNpilot_solid_2_scaffold_68_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13054..14034)
DNA (981bp) protein (327aa)
ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|SAAS:SAAS00055252}; EC=5.1.3.20 {ECO:0000256|SAAS:SAAS00055236};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
rfaD; ADP-glyceromanno-heptose 6-epimerase (EC:5.1.3.20); K03274 ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] rbh
ADP-L-glycero-D-manno-heptose-6-epimerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J6_9BRAD rbh
SCNpilot_solid_2_scaffold_68_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14213..15298
DNA (1086bp) protein (362aa)
rfaF; lipopolysaccharide heptosyltransferase II (EC:2.4.-.-); K02843 heptosyltransferase II [EC:2.4.-.-] rbh
Lipopolysaccharide heptosyltransferase II n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J7_9BRAD rbh
ADP-heptose--LPS heptosyltransferase 2 {ECO:0000313|EMBL:CEG07354.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
SCNpilot_solid_2_scaffold_68_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15463..16056
DNA (594bp) protein (198aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isom
gmhA; phosphoheptose isomerase (EC:5.3.1.-); K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] rbh
Phosphoheptose isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J8_9BRAD rbh
SCNpilot_solid_2_scaffold_68_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16053..16586
DNA (534bp) protein (178aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
D,D-heptose 1,7-bisphosphate phosphatase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2J9_9BRAD rbh
SCNpilot_solid_2_scaffold_68_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16552..17544)
DNA (993bp) protein (331aa)
lipopolysaccharide heptosyltransferase I; K02841 heptosyltransferase I [EC:2.4.-.-]
Lipopolysaccharide heptosyltransferase I n=1 Tax=Rhodovulum sp. PH10 PF33_9RHOB">RepID=J5PF33_9RHOB rbh
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:EJW10237.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="R
SCNpilot_solid_2_scaffold_68_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..18740
DNA (1014bp) protein (338aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
UDP-glucose 4-epimerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K1_9BRAD rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EFI52181.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_solid_2_scaffold_68_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18815..20623
DNA (1809bp) protein (603aa)
lipid A export ATP-binding/permease MsbA (EC:3.6.3.-); K06147 ATP-binding cassette, subfamily B, bacterial rbh
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K2_9BRAD rbh
ABC transporter related protein {ECO:0000313|EMBL:EFI52182.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;
SCNpilot_solid_2_scaffold_68_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20644..21336
DNA (693bp) protein (231aa)
fumarylacetoacetate hydrolase domain-containing protein 1 (EC:3.-.-.-) rbh
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K3_9BRAD rbh
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EFI52183.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
SCNpilot_solid_2_scaffold_68_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21354..21542)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07347.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_68_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21653..22102)
DNA (450bp) protein (150aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2K5_9BRAD
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EFI52185.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
cupin
SCNpilot_solid_2_scaffold_68_22
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22926..23264)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WV42_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36174.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-31
hypothetical protein
SCNpilot_solid_2_scaffold_68_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23926..24135)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIV3_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27495.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cold-shock protein, DNA-binding; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_solid_2_scaffold_68_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24561..25997)
DNA (1437bp) protein (479aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrola
ahcY; adenosylhomocysteinase AhcY (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] rbh
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002D875C8 rbh
SCNpilot_solid_2_scaffold_68_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26125..27315)
DNA (1191bp) protein (397aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
metK; S-adenosylmethionine synthase MetK (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] rbh
S-adenosylmethionine synthase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMP6_AFIFE rbh
SCNpilot_solid_2_scaffold_68_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27370..28713)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2L1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG07340.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
SCNpilot_solid_2_scaffold_68_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29018..29950)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEX4_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27491.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
SCNpilot_solid_2_scaffold_68_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30136..31308)
DNA (1173bp) protein (391aa)
Extracellular ligand-binding receptor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2L7_9BRAD rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EFI52197.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" s
putative Leu/Ile/Val-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_solid_2_scaffold_68_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31314..32177)
DNA (864bp) protein (288aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=666684 species="Ba
purU; formyltetrahydrofolate deformylase (EC:3.5.1.10); K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] rbh
Formyltetrahydrofolate deformylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2L8_9BRAD rbh
SCNpilot_solid_2_scaffold_68_30
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32300..33130
DNA (831bp) protein (277aa)
Uroporphyrinogen III synthase HEM4 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2L9_9BRAD rbh
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:EFI52199.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS
putative uroporphyrinogen-III synthase rbh
Displaying items 1-30 of 139 in total

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