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SCNpilot_solid_2_scaffold_112

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Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_112_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

173..757
DNA (585bp) protein (195aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Br
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] rbh
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPV5_AFIFE rbh
SCNpilot_solid_2_scaffold_112_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

763..1590
DNA (828bp) protein (276aa)
Metallophosphoesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7A5_9BRAD rbh
Metallophosphoesterase {ECO:0000313|EMBL:EFI51115.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein; K09769 hypothetical protein rbh
SCNpilot_solid_2_scaffold_112_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1701..2447
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein HMPREF9697_02066 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTG6_AFIFE rbh
Probable transcriptional regulatory protein HMPREF9697_02066 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afi
hypothetical protein rbh
SCNpilot_solid_2_scaffold_112_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2681..4048
DNA (1368bp) protein (456aa)
Magnesium transporter n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7A7_9BRAD rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scrat
mgtE; magnesium transporter; K06213 magnesium transporter rbh
SCNpilot_solid_2_scaffold_112_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4082..4597
DNA (516bp) protein (172aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
ruvC; holliday junction DNA nuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7A8_9BRAD rbh
SCNpilot_solid_2_scaffold_112_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4594..5211
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
ruvA; Holliday junction DNA helicase RuvA (EC:3.6.1.-); K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPU9_AFIFE rbh
SCNpilot_solid_2_scaffold_112_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5208..6251
DNA (1044bp) protein (348aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria;
ruvB; holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B0_9BRAD rbh
SCNpilot_solid_2_scaffold_112_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6269..6805
DNA (537bp) protein (179aa)
putative thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Putative thioesterase n=2 Tax=Oligotropha carboxidovorans RepID=B6JIZ2_OLICO
Putative thioesterase {ECO:0000313|EMBL:AEI05541.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovo
SCNpilot_solid_2_scaffold_112_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6855..7511
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGB5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29532.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transcriptional regulator rbh
SCNpilot_solid_2_scaffold_112_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7603..8103
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG09395.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_112_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8493..9206
DNA (714bp) protein (238aa)
Protein TolQ n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B4_9BRAD rbh
Protein TolQ {ECO:0000313|EMBL:EFI51124.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
tolQ; translocation protein TolQ; K03562 biopolymer transport protein TolQ rbh
SCNpilot_solid_2_scaffold_112_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9231..9683
DNA (453bp) protein (151aa)
Protein TolR n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B5_9BRAD
Biopolymer transport protein ExbD {ECO:0000313|EMBL:CEG09393.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat
tolR; translocation protein TolR; K03560 biopolymer transport protein TolR
SCNpilot_solid_2_scaffold_112_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9685..10626
DNA (942bp) protein (314aa)
Protein TolA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B6_9BRAD rbh
Protein TolA {ECO:0000313|EMBL:CEG09392.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacil
tolA; translocation protein TolA rbh
SCNpilot_solid_2_scaffold_112_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10664..12007
DNA (1344bp) protein (448aa)
Protein TolB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7B7_9BRAD rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
tolB; translocation protein TolB; K03641 TolB protein rbh
SCNpilot_solid_2_scaffold_112_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12242..12733
DNA (492bp) protein (164aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK92_AFIFE rbh
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EKS29526.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis
outer membrane lipoprotein; K03640 peptidoglycan-associated lipoprotein rbh
SCNpilot_solid_2_scaffold_112_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12872..13924
DNA (1053bp) protein (351aa)
Tol-pal system protein YbgF n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPT9_AFIFE rbh
Tol-pal system protein YbgF {ECO:0000313|EMBL:EKS29525.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 5369
TPR repeat protein rbh
SCNpilot_solid_2_scaffold_112_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14016..14933
DNA (918bp) protein (306aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.-); K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] rbh
tRNA(Ile)-lysidine synthase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C0_9BRAD rbh
SCNpilot_solid_2_scaffold_112_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15144..17060
DNA (1917bp) protein (639aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
Cell division protease FtsH -like protein (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C1_9BRAD rbh
SCNpilot_solid_2_scaffold_112_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17190..18365
DNA (1176bp) protein (392aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C2_9BRAD rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI51132.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
MFS transporter protein rbh
SCNpilot_solid_2_scaffold_112_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18494..19168
DNA (675bp) protein (225aa)
Transcriptional regulator, TetR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C3_9BRAD rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFI51133.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp.
transcriptional regulator, TetR family rbh
SCNpilot_solid_2_scaffold_112_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19306..20799
DNA (1494bp) protein (498aa)
glcD1; glycolate oxidase FAD-binding subunit GlcD; K00104 glycolate oxidase [EC:1.1.3.15] rbh
FAD linked oxidase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C4_9BRAD rbh
Putative FAD-linked oxidoreductase {ECO:0000313|EMBL:CEG09384.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat
SCNpilot_solid_2_scaffold_112_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20812..22056
DNA (1245bp) protein (415aa)
FAD linked oxidase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C5_9BRAD rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:EFI51135.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2
glcE; glycolate oxidase, FAD-binding subunit GlcE; K11472 glycolate oxidase FAD binding subunit rbh
SCNpilot_solid_2_scaffold_112_23
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22053..23402
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C6_9BRAD rbh
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp.
glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit rbh
SCNpilot_solid_2_scaffold_112_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23492..23914
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG09381.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_112_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24300..25286
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG09380.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
SCNpilot_solid_2_scaffold_112_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25344..27074)
DNA (1731bp) protein (577aa)
ABC transporter domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7C9_9BRAD rbh
ABC transporter domain protein {ECO:0000313|EMBL:EFI51139.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ABC transporter ATP-binding protein/permease; K02471 putative ATP-binding cassette transporter rbh
SCNpilot_solid_2_scaffold_112_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27392..29053
DNA (1662bp) protein (554aa)
L-lactate transport n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7D0_9BRAD rbh
Glycolate permease GlcA {ECO:0000313|EMBL:CEG09378.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
glcA; glycolate permease GlcA; K03303 lactate transporter, LctP family rbh
SCNpilot_solid_2_scaffold_112_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29200..29598
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7D1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI51141.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
hypothetical protein
SCNpilot_solid_2_scaffold_112_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29620..31155)
DNA (1536bp) protein (512aa)
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7D2_9BRAD rbh
Ribulose-1,5-biphosphate synthetase {ECO:0000313|EMBL:CEG09376.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Ca
putative oxidoreductase rbh
SCNpilot_solid_2_scaffold_112_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31193..32404)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7D3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG09375.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein rbh
Displaying items 1-30 of 118 in total

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