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SCNpilot_P_inoc_Novosphingobium_63_5

SCNpilot_P_inoc_Sphingomonadales_63_6
In projects: SCNpilot_P_inoc  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK Curated version: scnpilot_dereplicated_Sphingomonadales_1

Properties

Avg. coverage: 5.56 Longest contig: 100.14 Kbp Bin length: 3.52 Mbp GC content: 62.50 %
Contigs count: 210 Features count: 3441 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38

Description

highly fragmented

Displaying items 151-200 of 210 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1560
Order: Sphingomonadales (87.5%)
16 19003 bp 62.65 5.45 90.03
scnpilot_p_inoc_scaffold_1555
Order: Sphingomonadales (96.15%)
26 19102 bp 59.53 5.52 91.23
scnpilot_p_inoc_scaffold_2517
Species: Altererythrobacter atlanticus (66.67%)
18 19901 bp 65.46 5.73 91.85
scnpilot_p_inoc_scaffold_1434
Order: Sphingomonadales (95.45%)
22 20878 bp 60.58 5.22 93.87
scnpilot_p_inoc_scaffold_1431
Species: Altererythrobacter atlanticus (50%)
16 20944 bp 62.94 5.59 94.02
scnpilot_p_inoc_scaffold_1414
Genus: Novosphingobium (52.94%)
17 21228 bp 62.96 5.19 91.34
scnpilot_p_inoc_scaffold_1410
Species: Sphingobium sp. SYK-6 (89.47%)
19 21294 bp 60.85 6.21 95.07
scnpilot_p_inoc_scaffold_1400
Species: Novosphingobium tardaugens (54.17%)
24 21408 bp 63.20 5.65 94.03
scnpilot_p_inoc_scaffold_1706
Genus: Novosphingobium (57.14%)
21 21483 bp 63.99 5.10 92.19
scnpilot_p_inoc_scaffold_1321
Species: Altererythrobacter atlanticus (70.59%)
17 22886 bp 62.72 5.18 90.37
scnpilot_p_inoc_scaffold_1326
Order: Sphingomonadales (70.59%)
17 23656 bp 61.56 5.69 91.99
scnpilot_p_inoc_scaffold_1269
Order: Sphingomonadales (85.71%)
21 23808 bp 59.74 5.00 91.04
scnpilot_p_inoc_scaffold_1268
Order: Sphingomonadales (92%)
25 23813 bp 60.98 5.33 90.49
scnpilot_p_inoc_scaffold_4049
Order: Sphingomonadales (100%)
25 24216 bp 64.78 5.92 93.35
scnpilot_p_inoc_scaffold_1246
Order: Sphingomonadales (76.19%)
21 24398 bp 62.23 5.81 94.89
scnpilot_p_inoc_scaffold_1717
Order: Sphingomonadales (70.59%)
34 24519 bp 62.33 5.65 92.59
scnpilot_p_inoc_scaffold_1219
Species: Altererythrobacter atlanticus (62.5%)
24 24826 bp 62.13 5.47 90.49
scnpilot_p_inoc_scaffold_1171
Genus: Novosphingobium (60%)
25 25714 bp 62.51 5.38 90.77
scnpilot_p_inoc_scaffold_1897
Order: Sphingomonadales (70%)
30 26512 bp 60.81 5.69 84.35
scnpilot_p_inoc_scaffold_1142
Order: Sphingomonadales (81.48%)
27 26671 bp 62.02 5.36 90.84
scnpilot_p_inoc_scaffold_1130
Genus: Novosphingobium (55%)
20 27014 bp 65.24 6.03 92.27
scnpilot_p_inoc_scaffold_1099
Genus: Novosphingobium (50%)
26 27915 bp 61.82 5.34 94.53
scnpilot_p_inoc_scaffold_1076
Order: Sphingomonadales (63.64%)
22 28816 bp 63.55 5.56 93.48
scnpilot_p_inoc_scaffold_1074
Species: Altererythrobacter atlanticus (63.64%)
22 28896 bp 63.98 5.86 94.99
scnpilot_p_inoc_scaffold_1069
Order: Sphingomonadales (93.33%)
30 28981 bp 62.62 5.41 93.76
scnpilot_p_inoc_scaffold_1062
Order: Sphingomonadales (56%)
25 29090 bp 59.99 6.11 85.82
scnpilot_p_inoc_scaffold_1655
Order: Sphingomonadales (92.31%)
39 29594 bp 62.81 5.82 89.52
scnpilot_p_inoc_scaffold_1039
Genus: Novosphingobium (56.52%)
23 29899 bp 63.24 6.28 91.48
scnpilot_p_inoc_scaffold_1144
Order: Sphingomonadales (91.43%)
35 30687 bp 62.82 5.71 91.77
scnpilot_p_inoc_scaffold_1172
Order: Sphingomonadales (100%)
30 30950 bp 62.24 5.34 94.43
scnpilot_p_inoc_scaffold_967
Order: Sphingomonadales (96%)
25 33090 bp 62.59 5.27 90.69
scnpilot_p_inoc_scaffold_952
Order: Sphingomonadales (85.37%)
41 33540 bp 62.62 5.42 83.16
scnpilot_p_inoc_scaffold_1082
Order: Sphingomonadales (91.43%)
35 34148 bp 60.64 5.69 95.43
scnpilot_p_inoc_scaffold_926
Order: Sphingomonadales (78.79%)
33 34315 bp 61.71 5.60 89.24
scnpilot_p_inoc_scaffold_909
Order: Sphingomonadales (81.82%)
22 35252 bp 60.41 5.49 90.68
scnpilot_p_inoc_scaffold_1343
Order: Sphingomonadales (90.63%)
32 35289 bp 62.81 5.54 92.89
scnpilot_p_inoc_scaffold_890
Class: Alphaproteobacteria (60.87%)
46 36189 bp 59.85 5.80 87.53
scnpilot_p_inoc_scaffold_1621
Order: Sphingomonadales (89.29%)
28 36469 bp 63.13 6.33 93.38
scnpilot_p_inoc_scaffold_869
Order: Sphingomonadales (87.88%)
33 37264 bp 62.92 5.56 92.85
scnpilot_p_inoc_scaffold_847
Order: Sphingomonadales (71.43%)
35 39841 bp 62.56 5.82 90.72
scnpilot_p_inoc_scaffold_2173
Species: Altererythrobacter atlanticus (50%)
38 40165 bp 62.82 5.65 90.46
scnpilot_p_inoc_scaffold_816
Order: Sphingomonadales (89.47%)
38 40229 bp 62.59 5.60 93.42
scnpilot_p_inoc_scaffold_809
Species: Sphingobium lactosutens (50%)
36 40511 bp 63.56 5.14 93.86
scnpilot_p_inoc_scaffold_797
Order: Sphingomonadales (86.21%)
29 41697 bp 64.14 6.07 91.94
scnpilot_p_inoc_scaffold_790
Genus: Novosphingobium (50%)
44 42453 bp 61.69 5.41 90.76
scnpilot_p_inoc_scaffold_806
Order: Sphingomonadales (68.57%)
35 43428 bp 58.89 5.81 87.40
scnpilot_p_inoc_scaffold_1837
Order: Sphingomonadales (90.91%)
44 43707 bp 63.05 5.57 88.65
scnpilot_p_inoc_scaffold_761
Order: Sphingomonadales (85.11%)
47 44018 bp 63.52 5.75 85.55
scnpilot_p_inoc_scaffold_1208
Genus: Novosphingobium (65.91%)
44 44580 bp 64.50 5.80 90.78
scnpilot_p_inoc_scaffold_1207
Order: Sphingomonadales (92.16%)
51 45072 bp 62.54 5.26 90.74
Displaying items 151-200 of 210 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.