ggKbase home page

SCNpilot_solid_2_scaffold_90

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_2_scaffold_90_1
unknown

Not on your lists

3..80
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_solid_2_scaffold_90_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92..889)
DNA (798bp) protein (266aa)
uroporphyrin-III C-methyltransferase (EC:2.1.1.107)
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8P4_9PROT
Uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:EHL95518.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobact
SCNpilot_solid_2_scaffold_90_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

901..2061
DNA (1161bp) protein (387aa)
cbiD; cobalt-precorrin-6A synthase; K02188 cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=438
Putative cobalt-precorrin-6A synthase [deacetylating] n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IKS7_AZOC5 rbh
SCNpilot_solid_2_scaffold_90_4
Komagataeibacter rhaeticus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2025..2789)
DNA (765bp) protein (255aa)
cobM; putative precorrin-4 C11-methyltransferase (EC:2.1.1.133)
Precorrin-4 C(11)-methyltransferase n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S4R7_9PROT rbh
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:KDU94795.1}; TaxID=1432055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="K
SCNpilot_solid_2_scaffold_90_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2786..3160)
DNA (375bp) protein (125aa)
cobalamin (vitamin B12) biosynthesis protein CbiG; K02189 cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
Cobalamin (Vitamin B12) biosynthesis CbiG protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUS1_METNO
Cobalamin (Vitamin B12) biosynthesis CbiG protein {ECO:0000313|EMBL:ACL57139.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium
SCNpilot_solid_2_scaffold_90_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3157..4383)
DNA (1227bp) protein (409aa)
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit {ECO:0000313|EMBL:EFH11993.1}; EC=2.1.1.132 {ECO:0000313|EMBL:EFH11993.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphapr
cobalamin(vitamin B12) biosynthesis protein Precorrin-6Y C5,15-methyltransferase; K00595 precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase [EC:2.1.1.132 1.-.-.-] rbh
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RL28_9PROT rbh
SCNpilot_solid_2_scaffold_90_7
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4404..5192
DNA (789bp) protein (263aa)
precorrin-6x reductase; K05895 precorrin-6X reductase [EC:1.3.1.54]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00038062D2
Precorrin-6A reductase {ECO:0000313|EMBL:EHL95513.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source=
SCNpilot_solid_2_scaffold_90_8
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5159..5920)
DNA (762bp) protein (254aa)
Precorrin-3B C(17)-methyltransferase {ECO:0000313|EMBL:EFH11995.1}; EC=2.1.1.131 {ECO:0000313|EMBL:EFH11995.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
precorrin-3B C(17)-methyltransferase; K05934 precorrin-3B C17-methyltransferase [EC:2.1.1.131] rbh
Precorrin-3B C(17)-methyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RL30_9PROT rbh
SCNpilot_solid_2_scaffold_90_9
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5917..6660)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DAEAEC rbh
precorrin-2 C(20)-methyltransferase rbh
Precorrin-2 C20-methyltransferase {ECO:0000313|EMBL:AGA92212.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavic
SCNpilot_solid_2_scaffold_90_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6657..7289)
DNA (633bp) protein (211aa)
precorrin-8X methylmutase (EC:5.4.1.2); K06042 precorrin-8X methylmutase [EC:5.4.1.2]
Precorrin-8X methylmutase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8N6_9PROT
Cobalamin (Vitamin B12) biosynthesis protein precorrin-8X methylmutase CobH {ECO:0000313|EMBL:GAN76827.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Aceto
SCNpilot_solid_2_scaffold_90_11
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7286..8500)
DNA (1215bp) protein (405aa)
Precorrin-3B synthase {ECO:0000313|EMBL:EFH11971.1}; EC=1.14.13.83 {ECO:0000313|EMBL:EFH11971.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacterace
precorrin-3B synthase; K02229 precorrin-3B synthase [EC:1.14.13.83]
Precorrin-3B synthase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RL33_9PROT
SCNpilot_solid_2_scaffold_90_12
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8497..11862)
DNA (3366bp) protein (1122aa)
Cobaltochelatase, CobN subunit {ECO:0000313|EMBL:EFH11973.1}; EC=6.6.1.2 {ECO:0000313|EMBL:EFH11973.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobac
cobN; cobaltochelatase subunit CobN (EC:6.6.1.2); K02230 cobaltochelatase CobN [EC:6.6.1.2] rbh
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030B2CBF rbh
SCNpilot_solid_2_scaffold_90_13
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11867..12910)
DNA (1044bp) protein (348aa)
CobW n=1 Tax=Roseomonas sp. B5 RepID=UPI00030E645E rbh
cobalt-binding GTPase involved in cobalt incorporation; K02234 cobalamin biosynthesis protein CobW rbh
Cobalt-binding GTPase involved in cobalt incorporation {ECO:0000313|EMBL:ABI61555.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granuliba
SCNpilot_solid_2_scaffold_90_14
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12907..13353)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S4Q7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGG78431.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacet
hypothetical protein
SCNpilot_solid_2_scaffold_90_trna_3
unknown

Not on your lists

comp(13767..13840)
DNA (74bp)
transferRNA
SCNpilot_solid_2_scaffold_90_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14195..14599)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53228.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_solid_2_scaffold_90_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14630..14902)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG10316.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch di
hypothetical protein
SCNpilot_solid_2_scaffold_90_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14940..16040)
DNA (1101bp) protein (367aa)
namA; NADPH dehydrogenase NamA (EC:1.6.99.1) rbh
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J6_9BRAD rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:EFI53226.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp.
SCNpilot_solid_2_scaffold_90_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16370..17038)
DNA (669bp) protein (223aa)
Beta-lactamase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J4_9BRAD rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:EFI53224.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative hydrolase rbh
SCNpilot_solid_2_scaffold_90_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17110..17667)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ86_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30589.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
heme oxygenase
SCNpilot_solid_2_scaffold_90_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17686..17916)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSY8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30590.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_solid_2_scaffold_90_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18025..18615)
DNA (591bp) protein (197aa)
Response regulator protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BI33_OLICM rbh
response regulator protein; K15012 two-component system, response regulator RegA rbh
Response regulator receiver protein {ECO:0000313|EMBL:EFI53221.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NL
SCNpilot_solid_2_scaffold_90_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18689..20020)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afi
regB; sensor histidine kinase RegB (EC:2.7.13.3); K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3] rbh
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0J0_9BRAD rbh
SCNpilot_solid_2_scaffold_90_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20170..21495
DNA (1326bp) protein (442aa)
polyhydroxyalkanoate depolymerase; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] rbh
Polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Afipia felis ATCC 53690 RepID=K8NWK5_AFIFE rbh
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:EKS30593.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="A
SCNpilot_solid_2_scaffold_90_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21834..22589
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ92_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30594.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein; K07043 rbh
SCNpilot_solid_2_scaffold_90_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22855..25122)
DNA (2268bp) protein (756aa)
Penicillin-binding protein, 1A family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0I7_9BRAD rbh
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:EFI53217.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1
penicillin-binding protein rbh
SCNpilot_solid_2_scaffold_90_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25225..28023)
DNA (2799bp) protein (933aa)
glnD; [protein-PII] uridylyltransferase GlnD (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0I6_9BRAD rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00049024}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
SCNpilot_solid_2_scaffold_90_27
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28355..31093)
DNA (2739bp) protein (913aa)
DNA mismatch repair protein MutS n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0I1_9BRAD rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae;
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS rbh
SCNpilot_solid_2_scaffold_90_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31179..32285)
DNA (1107bp) protein (369aa)
Patatin n=1 Tax=Afipia sp. 1NLS2 RepID=D6V0I0_9BRAD rbh
Patatin {ECO:0000313|EMBL:EFI53210.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
esterase; K07001 NTE family protein rbh
SCNpilot_solid_2_scaffold_90_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33165..34457
DNA (1293bp) protein (431aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hyd
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NT01_AFIFE rbh
Displaying items 1-30 of 130 in total

View Taxonomy