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SCNpilot_cont_1000_p_scaffold_139

Search features with annotation key words

Displaying items 31-60 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_139_31
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(31724..32416)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUG3_CHIPD
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_cont_1000_p_scaffold_139_32
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(32448..32888)
DNA (441bp) protein (147aa)
50S ribosomal protein L11 n=1 Tax=Niabella soli DSM 19437 RepID=H1NSW6_9SPHI
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_cont_1000_p_scaffold_139_33
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33515..36088
DNA (2574bp) protein (858aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL85927.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Putative uncharacterized protein id=3854189 bin=GWF2_Bacteroidetes_38_335 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
SCNpilot_cont_1000_p_scaffold_139_34
unknown

Not on your lists

36183..36956
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_35
unknown

Not on your lists

37116..38828
DNA (1713bp) protein (571aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_36
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

38916..40283
DNA (1368bp) protein (456aa)
serine/threonine transporter n=1 Tax=Cytophagales str. B6 RepID=UPI0003B522B4
Amino acid transporter {ECO:0000313|EMBL:CCH55384.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
serine/threonine exchange transporter, LAT family
SCNpilot_cont_1000_p_scaffold_139_37
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

40280..41446
DNA (1167bp) protein (389aa)
Isopenicillin-N epimerase (EC:5.1.1.17); K04127 isopenicillin-N epimerase [EC:5.1.1.17] rbh
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00031952A2 rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_cont_1000_p_scaffold_139_38
Polaribacter sp. MED152, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

41533..43719
DNA (2187bp) protein (729aa)
Uncharacterized protein n=1 Tax=Polaribacter sp. MED152 RepID=A2TXF8_9FLAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ43109.1}; TaxID=313598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. MED152.;"
SCNpilot_cont_1000_p_scaffold_139_39
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43769..44617)
DNA (849bp) protein (283aa)
Quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:AEA43079.1}; EC=1.1.5.2 {ECO:0000313|EMBL:AEA43079.1};; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Quinoprotein glucose dehydrogenase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9T3_FLUTR
SCNpilot_cont_1000_p_scaffold_139_40
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

44993..45403
DNA (411bp) protein (137aa)
Long-chain acyl-CoA thioester hydrolase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DGY5_9BACT
Long-chain acyl-CoA thioester hydrolase {ECO:0000313|EMBL:EDM28868.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
thioesterase superfamily protein
SCNpilot_cont_1000_p_scaffold_139_41
unknown

Not on your lists

comp(45473..46666)
DNA (1194bp) protein (398aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_42
unknown

Not on your lists

comp(46765..46971)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_43
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

47111..47503
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00037D27B7
Contig102, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75440.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
lactoylglutathione lyase family protein
SCNpilot_cont_1000_p_scaffold_139_44
unknown

Not on your lists

47600..47812
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_45
unknown

Not on your lists

comp(47867..48181)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_46
uncultured Flavobacteriia bacterium, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48153..50021)
DNA (1869bp) protein (623aa)
Putative uncharacterized protein n=1 Tax=uncultured Flavobacteriia bacterium RepID=H6RER5_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:CCF99526.1}; TaxID=212695 species="Bacteria; Bacteroidetes; Flavobacteriia; environmental samples.;" source="uncultured Flavobacteriia bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_139_47
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(50258..50632)
DNA (375bp) protein (125aa)
RRM domain-containing RNA-binding protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CK07_9FLAO
RRM domain-containing RNA-binding protein {ECO:0000313|EMBL:EJL73134.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
RNA-binding protein rbpA
SCNpilot_cont_1000_p_scaffold_139_48
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

50718..53744
DNA (3027bp) protein (1009aa)
Putative uncharacterized protein id=4241549 bin=GWF2_Bacteroidetes_33_38 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699 rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_cont_1000_p_scaffold_139_49
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(53821..54180)
DNA (360bp) protein (120aa)
50S ribosomal protein L19 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJT1_NIAKG
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_cont_1000_p_scaffold_139_50
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(54247..54936)
DNA (690bp) protein (230aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
tRNA (Guanine37-N(1)-) methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N1)-methyltransferase n=1 Tax=Segetibacter koreensis RepID=UPI0003735EA0 rbh
SCNpilot_cont_1000_p_scaffold_139_51
unknown

Not on your lists

comp(54943..55197)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_52
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(55197..55706)
DNA (510bp) protein (170aa)
Ribosome maturation factor RimM n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQD8_CHIPD
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_139_53
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(55803..58166)
DNA (2364bp) protein (788aa)
Gliding motility-related protein id=4001221 bin=GWF2_Bacteroidetes_38_335 species=Saprospira grandis genus=Saprospira taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
leucine-rich repeat-containing protein
Tax=GWA2_Bacteroidetes_30_7_curated
SCNpilot_cont_1000_p_scaffold_139_54
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

58473..59765
DNA (1293bp) protein (431aa)
Na+ dependent nucleoside transporter domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S945_PEDSD rbh
Na+ dependent nucleoside transporter domain-containing protein {ECO:0000313|EMBL:KIC94328.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Na+ dependent nucleoside transporter domain-containing protein; K03317 concentrative nucleoside transporter, CNT family rbh
SCNpilot_cont_1000_p_scaffold_139_55
unknown

Not on your lists

comp(59766..60260)
DNA (495bp) protein (165aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_139_56
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(60263..61810)
DNA (1548bp) protein (516aa)
carboxypeptidase Taq; K01299 carboxypeptidase Taq [EC:3.4.17.19] rbh
Carboxypeptidase Taq {ECO:0000313|EMBL:ACU64298.1}; EC=3.4.17.19 {ECO:0000313|EMBL:ACU64298.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Carboxypeptidase Taq n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ60_CHIPD rbh
SCNpilot_cont_1000_p_scaffold_139_57
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(61810..64068)
DNA (2259bp) protein (753aa)
(P)ppGpp synthetase I, SpoT/RelA {ECO:0000313|EMBL:ACU64452.1}; EC=2.7.6.5 {ECO:0000313|EMBL:ACU64452.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
(p)ppGpp synthetase I SpoT/RelA; K00951 GTP pyrophosphokinase [EC:2.7.6.5]
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSK3_CHIPD
SCNpilot_cont_1000_p_scaffold_139_58
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(64191..67748)
DNA (3558bp) protein (1186aa)
Tetratricopeptide domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMA7_CHIPD
hypothetical protein
Tetratricopeptide domain protein {ECO:0000313|EMBL:ACU64012.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_139_59
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

67984..68469
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMA6_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64011.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_139_60
unknown

Not on your lists

68479..68688
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C5475
Displaying items 31-60 of 131 in total

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