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SCN18_25_8_15_R2_B_scaffold_1364

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1364_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..509
DNA (507bp) protein (169aa)
Putrescine-binding periplasmic protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REC4_PELHB
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
putrescine ABC transporter putrescine-binding protein PotF
SCN18_25_8_15_R2_B_scaffold_1364_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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579..1733
DNA (1155bp) protein (385aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Putrescine transport ATP-binding protein PotG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REC5_PELHB
putrescine transport ATP-binding protein PotG
SCN18_25_8_15_R2_B_scaffold_1364_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1918..2871
DNA (954bp) protein (318aa)
Putrescine transport system permease protein PotH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REC6_PELHB
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFL29943.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putrescine transport system permease protein PotH
SCN18_25_8_15_R2_B_scaffold_1364_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2873..3682
DNA (810bp) protein (270aa)
Putrescine transport system permease protein PotI n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REC7_PELHB
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFL29944.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putrescine transport system permease protein PotI
SCN18_25_8_15_R2_B_scaffold_1364_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4177..5031
DNA (855bp) protein (285aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Formyltetrahydrofolate deformylase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VH94_9RHIZ
formyltetrahydrofolate deformylase
SCN18_25_8_15_R2_B_scaffold_1364_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5053..5493)
DNA (441bp) protein (147aa)
Rrf2 family transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REG7_PELHB
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KKB78412.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Rrf2 family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1364_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5503..7923)
DNA (2421bp) protein (807aa)
Potassium-efflux system protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J940_AGRRK
Potassium efflux system protein {ECO:0000313|EMBL:KFC71790.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
potassium-efflux system protein
SCN18_25_8_15_R2_B_scaffold_1364_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8073..9164)
DNA (1092bp) protein (364aa)
RecD-like DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8Q6_PELHB
ATP-binding protein {ECO:0000313|EMBL:KFL29948.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
recombinase D
SCN18_25_8_15_R2_B_scaffold_1364_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9164..9847)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F9B36D
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KFL29949.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
fumarylacetoacetate hydrolase
SCN18_25_8_15_R2_B_scaffold_1364_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9840..10901)
DNA (1062bp) protein (354aa)
aldo/keto reductase n=1 Tax=Burkholderia kururiensis RepID=UPI0003455F5C
Aldo/keto reductase {ECO:0000313|EMBL:KFL29950.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
aldo/keto reductase protein
SCN18_25_8_15_R2_B_scaffold_1364_11
unknown

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11055..11255
DNA (201bp) protein (67aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1364_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11332..12150
DNA (819bp) protein (273aa)
Inner membrane transporter rhtA n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPB6_TISMK
Transporter {ECO:0000313|EMBL:KFL29951.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transporter
SCN18_25_8_15_R2_B_scaffold_1364_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12210..12611
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7X2_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:KFL29952.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1364_14
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12706..14178
DNA (1473bp) protein (491aa)
cell shape-determining protein n=1 Tax=Rhizobium meliloti RepID=UPI00035E85C6
Uncharacterized protein {ECO:0000313|EMBL:KKB78411.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lipopolysaccharide biosynthesis protein
SCN18_25_8_15_R2_B_scaffold_1364_15
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14225..15016)
DNA (792bp) protein (264aa)
Glycosyl transferase, WecB/TagA/CpsF family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZM5_9RHIZ
UDP-hexose transferase {ECO:0000313|EMBL:KFL29953.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family
SCN18_25_8_15_R2_B_scaffold_1364_16
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15135..16193)
DNA (1059bp) protein (353aa)
Glycosyl transferase group 1 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZM4_9RHIZ
Glycosyl transferase family 1 {ECO:0000313|EMBL:KFL29954.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glycosyltransferase
SCN18_25_8_15_R2_B_scaffold_1364_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16300..17181
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZM3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL29955.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1364_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17163..18104)
DNA (942bp) protein (314aa)
Glycosyl transferase family 2 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZM2_9RHIZ
Glycosyl transferase family A {ECO:0000313|EMBL:KFL29956.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative glycosyltransferase
SCN18_25_8_15_R2_B_scaffold_1364_19
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18119..19444)
DNA (1326bp) protein (442aa)
polymerase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036D0FAD
Polymerase {ECO:0000313|EMBL:KFL29957.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lipid A core-O-antigen ligase-like enyme
SCN18_25_8_15_R2_B_scaffold_1364_20
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19491..20852)
DNA (1362bp) protein (454aa)
Lipid A core-O-antigen ligase-like enyme n=1 Tax=Rhizobium sp. CF122 RepID=J2I1M8_9RHIZ
Polymerase {ECO:0000313|EMBL:KFL29957.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lipid A core-O-antigen ligase-like enyme
SCN18_25_8_15_R2_B_scaffold_1364_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21038..22102
DNA (1065bp) protein (355aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glycoside hydrolase family 10 n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037460C0
beta-1,4-xylanase
SCN18_25_8_15_R2_B_scaffold_1364_22
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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22102..23538
DNA (1437bp) protein (479aa)
Polysaccharide biosynthesis protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZL8_9RHIZ
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KFL29959.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
membrane protein involved in the export of O-antigen and teichoic acid
Displaying 22 items

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