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SCN18_25_8_15_R2_B_scaffold_1365

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1365_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..377)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BUA7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL58296.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1365_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370..627)
DNA (258bp) protein (86aa)
Phd_YefM protein n=1 Tax=Rhizobium sp. CF122 RepID=J2IQT1_9RHIZ
type II toxin-antitoxin system antitoxin Phd/YefM family protein
Type II toxin-antitoxin system antitoxin Phd/YefM family protein {ECO:0000313|EMBL:AJD45186.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCN18_25_8_15_R2_B_scaffold_1365_3
SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_28, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_28, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_28, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_28, SCNPILOT_CONT_300_BF_Rhizobiales_mobile_60_28, Mobile_element

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comp(788..1795)
DNA (1008bp) protein (336aa)
UPI0003D0689F related cluster n=1 Tax=unknown RepID=UPI0003D0689F
Antirestriction protein {ECO:0000313|EMBL:ESZ03713.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ArdC-like protein
SCN18_25_8_15_R2_B_scaffold_1365_4
SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial, Actinobacteria, Actinobacteria, Bacteria

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comp(2046..3314)
DNA (1269bp) protein (423aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
UPI0003D01885 related cluster n=1 Tax=unknown RepID=UPI0003D01885
periplasmic sensor signal transduction histidine kinase
SCN18_25_8_15_R2_B_scaffold_1365_5
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3311..3877)
DNA (567bp) protein (189aa)
UPI0003CF79BA related cluster n=1 Tax=unknown RepID=UPI0003CF79BA
Uncharacterized protein {ECO:0000313|EMBL:KFC70183.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1365_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3861..4571)
DNA (711bp) protein (237aa)
FkbM family methyltransferase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XLX7_9RHIZ
Methyltransferase, FkbM family {ECO:0000313|EMBL:KFC70184.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
FkbM family methyltransferase
SCN18_25_8_15_R2_B_scaffold_1365_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4575..5213)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FB35_9RHIZ
Transcriptional regulatory protein TctD {ECO:0000313|EMBL:KFC70185.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
response regulator receiver protein
SCN18_25_8_15_R2_B_scaffold_1365_8
unknown

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comp(5849..6055)
DNA (207bp) protein (69aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1365_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6170..6823)
DNA (654bp) protein (218aa)
Nuclease (SNase domain-containing protein) n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6ECR9_SINMK
Nuclease (SNase domain protein) {ECO:0000313|EMBL:KFC70189.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
nuclease
SCN18_25_8_15_R2_B_scaffold_1365_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6820..7371)
DNA (552bp) protein (184aa)
Succinoglycan biosynthesis protein ExoI-like protein n=1 Tax=Rhizobium sp. RepID=L0NM32_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KFC70190.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
succinoglycan biosynthesis protein ExoI-like protein
SCN18_25_8_15_R2_B_scaffold_1365_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7368..7985)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5Z8_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KFC70191.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1365_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8132..9013
DNA (882bp) protein (294aa)
Lytic transglycosylase catalytic n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7P8_OCHA4
Transglycosylase SLT domain protein {ECO:0000313|EMBL:KFC70192.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
lytic transglycosylase catalytic
SCN18_25_8_15_R2_B_scaffold_1365_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9033..9377
DNA (345bp) protein (115aa)
Type IV secrection system pilin protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5Z6_AGRVS
Type IV secretion system pilin subunit VirB2 {ECO:0000313|EMBL:KFC70193.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
avhB2; type IV secrection system pilin protein
SCN18_25_8_15_R2_B_scaffold_1365_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9377..9673
DNA (297bp) protein (99aa)
Type IV secretory pathway VirB3 family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UMV5_SINMW
Type IV secretion system protein VirB3 {ECO:0000313|EMBL:KFC70194.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
type IV secretory pathway VirB3 family protein
SCN18_25_8_15_R2_B_scaffold_1365_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9677..12079
DNA (2403bp) protein (801aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7P5_OCHA4
Conjugative transfer protein TrbE {ECO:0000313|EMBL:KFC70195.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
type IV secretion/conjugal transfer ATPase
SCN18_25_8_15_R2_B_scaffold_1365_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12079..13173
DNA (1095bp) protein (365aa)
Type IV system transglycosylase n=1 Tax=Rhizobium sp. RepID=L0NMK5_RHISP
Lytic transglycosylase catalytic {ECO:0000313|EMBL:KFC70196.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Type IV system transglycosylase
SCN18_25_8_15_R2_B_scaffold_1365_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13176..13898
DNA (723bp) protein (241aa)
Conjugal transfer protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7P3_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:KFC70197.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
conjugal transfer protein
SCN18_25_8_15_R2_B_scaffold_1365_18
scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, Plasmid-like

Not on your lists

13876..14097
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0002FAA876
hypothetical protein
Lipoprotein {ECO:0000313|EMBL:KGE80185.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCN18_25_8_15_R2_B_scaffold_1365_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14107..15129
DNA (1023bp) protein (341aa)
Type IV secretory pathway VirB6 component n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XBU5_SINMM
Type IV secretion system protein VirB6 {ECO:0000313|EMBL:KFC70198.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
virB6-2; Type IV secretory pathway VirB6 component
SCN18_25_8_15_R2_B_scaffold_1365_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15148..15837
DNA (690bp) protein (230aa)
type VI secretion protein n=1 Tax=Sinorhizobium medicae RepID=UPI0003728C83
Type IV secretion system protein virB8 {ECO:0000313|EMBL:KFC70199.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
virB8-2; conjugal transfer protein
SCN18_25_8_15_R2_B_scaffold_1365_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15840..16643
DNA (804bp) protein (268aa)
Virb3 protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABZ2_RHIFH
Conjugative transfer protein TrbG {ECO:0000313|EMBL:KFC70200.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
virb3; Type IV secretion system protein virB9 Flags: Precursor
SCN18_25_8_15_R2_B_scaffold_1365_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16643..17902
DNA (1260bp) protein (420aa)
Type IV secretory pathway, VirB10 component n=2 Tax=Rhizobium meliloti RepID=M4IFZ0_RHIML
Conjugative transfer protein TrbI {ECO:0000313|EMBL:KFC70201.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Type IV secretory pathway, VirB10 component
SCN18_25_8_15_R2_B_scaffold_1365_23
scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, scnpilot_dereplicated_Plasmid_Rhizobiales_1, Plasmid-like

Not on your lists

17902..18927
DNA (1026bp) protein (342aa)
type VI secretion protein n=1 Tax=Sinorhizobium medicae RepID=UPI00037393DF
Type II secretion system protein E {ECO:0000313|EMBL:KFC70202.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
virb1; Type IV secretion system protein virB11
SCN18_25_8_15_R2_B_scaffold_1365_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18911..21046
DNA (2136bp) protein (712aa)
TRAG family protein n=1 Tax=Rhizobium sp. RepID=L0NMS7_RHISP
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:KFC70203.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
TRAG family protein
SCN18_25_8_15_R2_B_scaffold_1365_25
unknown

Not on your lists

comp(21076..21303)
DNA (228bp) protein (76aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1365_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21320..23674)
DNA (2355bp) protein (785aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I304_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC70204.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
Displaying 26 items

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