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2019_SCN_bioreactor_t3_biofilm_scaffold_170411

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..119)
DNA (117bp) protein (39aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C044
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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434..628
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54142.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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654..1184
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A4D8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54143.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1184..1396
DNA (213bp) protein (71aa)
Transcriptional regulator, XRE family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCD3_NOVAD
Transcriptional regulator of Cro/CI family {ECO:0000313|EMBL:GAO54144.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
XRE family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1767..2279
DNA (513bp) protein (171aa)
50S ribosomal protein L10 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL10_NOVAD
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplJ; 50S ribosomal protein L10
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2346..2723
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL7_NOVAD
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplL; 50S ribosomal protein L7/L12
2019_SCN_bioreactor_t3_biofilm_scaffold_170411_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2935..3876)
DNA (942bp) protein (314aa)
DNA-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B567A5
Magnesium and cobalt efflux protein corC {ECO:0000313|EMBL:GAO54148.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 7 items

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