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cn_combo_scaffold_1934

Alias: MES20_47

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1934_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..734)
DNA (732bp) protein (244aa)
Putative phage integrase n=1 Tax=Rhizobium sp. RepID=L0NAK3_RHISP
Integrase {ECO:0000313|EMBL:EYR80086.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integrase
cn_combo_scaffold_1934_trna_1
unknown

Not on your lists

comp(1129..1199)
DNA (71bp)
transferRNA
cn_combo_scaffold_1934_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1313..2338)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C588E
Uncharacterized protein {ECO:0000313|EMBL:CDX44032.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
cn_combo_scaffold_1934_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2554..3900
DNA (1347bp) protein (449aa)
exopolyphosphatase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003693364
Exopolyphosphatase {ECO:0000313|EMBL:ESX81882.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC
Ppx/GppA phosphatase
cn_combo_scaffold_1934_4
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3897..4619
DNA (723bp) protein (241aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
23S rRNA methyltransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI000377F8CA
23S rRNA methylase
cn_combo_scaffold_1934_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4614..6038)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364E44A
Major facilitator superfamily transporter {ECO:0000313|EMBL:EKF18549.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source
major facilitator superfamily protein
cn_combo_scaffold_1934_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6136..7203)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003807FFD
zinc metalloendopeptidase rbh
Putative zinc metalloendopeptidase {ECO:0000313|EMBL:ACP24139.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobiu
cn_combo_scaffold_1934_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7193..8284)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000368BB30
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDH84627.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
cn_combo_scaffold_1934_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8541..10043
DNA (1503bp) protein (501aa)
inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine-5`-monophosphate dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003625220
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
cn_combo_scaffold_1934_9
unknown

Not on your lists

comp(10130..10282)
DNA (153bp) protein (51aa)

This feature has no annotations

cn_combo_scaffold_1934_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10428..11585)
DNA (1158bp) protein (386aa)
ribonuclease D (EC:3.1.13.5)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=765698 species="Bacteria; Proteobacteria; Alph
ribonuclease D n=1 Tax=Hoeflea sp. 108 RepID=UPI000363D285
cn_combo_scaffold_1934_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11669..12913)
DNA (1245bp) protein (415aa)
MFS transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D0ED3
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCV13167.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesor
hypothetical protein
cn_combo_scaffold_1934_12
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13063..13479
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003752F5C
Putative GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EIZ82283.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" sou
putative GCN5-related N-acetyltransferase
cn_combo_scaffold_1934_13
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13617..15407
DNA (1791bp) protein (597aa)
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036C6327
cn_combo_scaffold_1934_14
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..16697)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003793A50
Putative uncharacterized protein {ECO:0000313|EMBL:EHH05192.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz
hypothetical protein
cn_combo_scaffold_1934_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16965..19268
DNA (2304bp) protein (768aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=1287292 species="Ba
DNA topoisomerase IV subunit A n=1 Tax=Hoeflea sp. 108 RepID=UPI000379753F
DNA topoisomerase IV, A subunit, proteobacterial
cn_combo_scaffold_1934_16
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19402..20625
DNA (1224bp) protein (408aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037E40FC
Uncharacterized protein {ECO:0000313|EMBL:CCV13175.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
cn_combo_scaffold_1934_17
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..21535)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F966D
Membrane protein {ECO:0000313|EMBL:ESY29934.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC39
hypothetical protein
cn_combo_scaffold_1934_18
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21587..22342)
DNA (756bp) protein (252aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8)
arginyl-tRNA-protein transferase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E4632
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:00002
cn_combo_scaffold_1934_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22482..22952)
DNA (471bp) protein (157aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003796DAA
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:ADV13613.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobiu
cn_combo_scaffold_1934_20
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23090..24121)
DNA (1032bp) protein (344aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; P
delta-aminolevulinic acid dehydratase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D3FF8
cn_combo_scaffold_1934_21
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24264..25307
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370A722
3-hydroxyisobutyryl-CoA hydrolase {ECO:0000313|EMBL:ESW92625.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhi
enoyl-CoA hydratase/isomerase
cn_combo_scaffold_1934_22
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25304..25726
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035EE221
Uncharacterized protein {ECO:0000313|EMBL:ESY96748.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
cn_combo_scaffold_1934_23
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25940..26455
DNA (516bp) protein (172aa)
MarR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000367F492
MarR family transcriptional regulator {ECO:0000313|EMBL:EHH11852.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mes
MarR family transcriptional regulator
cn_combo_scaffold_1934_24
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26791..28044
DNA (1254bp) protein (418aa)
amidase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A7E07
Amidase {ECO:0000313|EMBL:ESZ76334.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
ErfK/YbiS/YcfS/YnhG family protein
Displaying 25 items

View Taxonomy