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berkeley_reactor_200306_biofilm_scaffold_125732

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_125732_1
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..930)
DNA (930bp) protein (310aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
dctB; C4-dicarboxylate transport two-component sensor histidine kinase transcriptional regulatory protein (EC:2.7.3.-)
Putative C4-dicarboxylate transport sensor protein DctB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZVE0_9PROT
berkeley_reactor_200306_biofilm_scaffold_125732_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1168..2496
DNA (1329bp) protein (443aa)
C4-dicarboxylate transport protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=DCTA_AZOC5
C4-dicarboxylate transporter
C4-dicarboxylate transport protein {ECO:0000255|HAMAP-Rule:MF_01300}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_125732_3
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2883..3779)
DNA (897bp) protein (299aa)
Fructose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:KHD20023.1}; EC=4.1.2.13 {ECO:0000313|EMBL:KHD20023.1};; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
Fructose-1,6-bisphosphate aldolase n=1 Tax=Burkholderia sp. SJ98 RepID=K8R8J9_9BURK
fructose-bisphosphate aldolase
berkeley_reactor_200306_biofilm_scaffold_125732_4
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4111..5070)
DNA (960bp) protein (320aa)
Serine protease protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA65_AGRRK
serine protease
Uncharacterized protein {ECO:0000313|EMBL:GAJ94121.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
berkeley_reactor_200306_biofilm_scaffold_125732_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5193..6206)
DNA (1014bp) protein (338aa)
Periplasmic sugar-binding protein of sugar ABC transporter n=7 Tax=Rhizobium meliloti RepID=F6BTD6_SINMB
ABC-type sugar transport system, periplasmic component
Putative periplasmic binding ABC transporter {ECO:0000313|EMBL:CAC47775.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
berkeley_reactor_200306_biofilm_scaffold_125732_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6267..7274)
DNA (1008bp) protein (336aa)
ABC-type transporter, integral membrane subunit n=8 Tax=Rhizobium meliloti RepID=F6BTD7_SINMB
ABC transporter permease
Sugar transport system permease {ECO:0000313|EMBL:CAC47776.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
berkeley_reactor_200306_biofilm_scaffold_125732_7
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7296..8039)
DNA (744bp) protein (248aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
UPI0003D0505F related cluster n=1 Tax=unknown RepID=UPI0003D0505F
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESZ43887.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
berkeley_reactor_200306_biofilm_scaffold_125732_8
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8209..9381
DNA (1173bp) protein (391aa)
UPI0003CE6D5F related cluster n=1 Tax=unknown RepID=UPI0003CE6D5F
ROK family transcriptional regulator {ECO:0000313|EMBL:ESY15839.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
ROK family protein
berkeley_reactor_200306_biofilm_scaffold_125732_9
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9413..10489
DNA (1077bp) protein (359aa)
UPI0003CFE423 related cluster n=1 Tax=unknown RepID=UPI0003CFE423
Oxidoreductase {ECO:0000313|EMBL:ESZ50303.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_125732_10
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10489..11322
DNA (834bp) protein (278aa)
UPI0003D0119D related cluster n=1 Tax=unknown RepID=UPI0003D0119D
Epimerase {ECO:0000313|EMBL:ESZ50304.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
xylose isomerase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_125732_11
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11319..12125
DNA (807bp) protein (269aa)
Alpha/beta hydrolase n=2 Tax=Mesorhizobium RepID=V7GYL8_9RHIZ
Alpha/beta hydrolase {ECO:0000313|EMBL:ESZ03877.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
alpha/beta hydrolase fold protein
berkeley_reactor_200306_biofilm_scaffold_125732_12
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12122..13006
DNA (885bp) protein (295aa)
Transcriptional regulator/sugar kinase (EC:2.7.1.55)
Sugar kinase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GWK8_9RHIZ
Sugar kinase {ECO:0000313|EMBL:ESZ04116.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
berkeley_reactor_200306_biofilm_scaffold_125732_13
unknown

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comp(13041..13178)
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 13 items

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