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berkeley_reactor_200306_biofilm_scaffold_57697

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_57697_1
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..139)
DNA (138bp) protein (46aa)
Monosaccharide-transporting ATPase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JID1_9RHIZ
sugar uptake ABC transporter ATP-binding protein
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EMG52038.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
berkeley_reactor_200306_biofilm_scaffold_57697_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(385..1353)
DNA (969bp) protein (323aa)
ABC transporter, periplasmic solute-binding protein n=2 Tax=Rhizobium meliloti RepID=F7XJV4_SINMM
ABC transporter substrate-binding protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:AEH83282.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
berkeley_reactor_200306_biofilm_scaffold_57697_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1638..2264
DNA (627bp) protein (209aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01410}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_01410};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_01410};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_01410}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_01410}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
Glucose-6-phosphate isomerase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XJV3_SINMM
putative glucose-6-phosphate isomerase
berkeley_reactor_200306_biofilm_scaffold_57697_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2282..3235
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PIS3_RHIML
Shikimate dehydrogenase {ECO:0000313|EMBL:KGM35821.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_57697_5
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3304..4170
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UCB9_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR61299.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_57697_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4397..5287
DNA (891bp) protein (297aa)
RpiR family transcriptional regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KA41_9RHIZ
RpiR family transcriptional regulator {ECO:0000313|EMBL:KGM35822.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
RpiR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_57697_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5310..6086)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T5B0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KDP71134.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hcpD; beta-lactamase HcpD precursor
berkeley_reactor_200306_biofilm_scaffold_57697_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6146..7159)
DNA (1014bp) protein (338aa)
Putative transcriptional regulator lacI family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FG89_9RHIZ
Putative transcriptional regulator lacI family {ECO:0000313|EMBL:CCV15325.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
lacI; LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_57697_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7174..7311)
DNA (138bp) protein (46aa)
UPI0003D02E38 related cluster n=1 Tax=unknown RepID=UPI0003D02E38
Sulfurtransferase {ECO:0000313|EMBL:KGM35824.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alcohol dehydrogenase
Displaying 9 items

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