ggKbase home page

scnpilot_p_inoc_scaffold_241

Search features with annotation key words

Displaying items 121-147 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_241_121
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

129276..129707
DNA (432bp) protein (144aa)
carbon monoxide dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003742656
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:EWT07473.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireduc
Carbon monoxide dehydrogenase subunit G
scnpilot_p_inoc_scaffold_241_122
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129704..130552
DNA (849bp) protein (283aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IW16_POLGS rbh
alpha/beta hydrolase rbh
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADZ70298.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 257
scnpilot_p_inoc_scaffold_241_123
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130626..131300
DNA (675bp) protein (225aa)
Lytic transglycosylase, catalytic id=2459028 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
invasion protein Tax=GWF1_Rhodobacteraceae_65_7_curated
lytic transglycosylase catalytic subunit
scnpilot_p_inoc_scaffold_241_124
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131311..133371
DNA (2061bp) protein (687aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX57_9RHOB rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:EEW26582.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodob
flhA; flagellar biosynthesis protein FlhA
scnpilot_p_inoc_scaffold_241_125
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133368..134141
DNA (774bp) protein (258aa)
Type III secretion system inner membrane R protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX58_9RHOB
Type III secretion system inner membrane R protein {ECO:0000313|EMBL:EEW26583.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;"
flagellar biosynthetic protein FliR
scnpilot_p_inoc_scaffold_241_126
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134138..135220
DNA (1083bp) protein (361aa)
flhB; flagellar biosynthesis protein FlhB; K02401 flagellar biosynthetic protein FlhB Tax=CG_Rhodob_01
Type III secretion exporter id=2458960 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
flhB; flagellar biosynthetic protein FlhB
scnpilot_p_inoc_scaffold_241_127
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135217..135546
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX60_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW26585.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW
hypothetical protein
scnpilot_p_inoc_scaffold_241_128
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135549..137999)
DNA (2451bp) protein (817aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=GWF1_Rhodobacteraceae_65_7_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3) rbh
DNA gyrase subunit B id=2576208 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_241_129
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138080..138700)
DNA (621bp) protein (207aa)
Transporter, LysE family protein id=2576211 bin=GWF1_Rhodobacteraceae_65_7 species=Roseovarius sp. TM1035 genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
LysE type translocator-like protein Tax=GWF1_Rhodobacteraceae_65_7_curated
LysE type translocator-like protein
scnpilot_p_inoc_scaffold_241_130
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138708..139136)
DNA (429bp) protein (143aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=2576215 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
glyoxalase/bleomycin resistance protein/dioxygenase; K07032 Tax=GWF1_Rhodobacteraceae_65_7_curated
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_241_131
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139133..140224)
DNA (1092bp) protein (364aa)
DNA replication and repair protein RecF id=2576217 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
recF; recombination protein F; K03629 DNA replication and repair protein RecF Tax=GWF1_Rhodobacteraceae_65_7_curated
recF; recombination protein F
scnpilot_p_inoc_scaffold_241_132
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140307..141425)
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=GWF1_Rhodobacteraceae_65_7_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=2576218 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_241_133
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141582..143087)
DNA (1506bp) protein (502aa)
Chromosomal replication initiator protein DnaA n=4 Tax=Rhodobacter RepID=DNAA_RHOS1 rbh
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
dnaA; chromosomal replication initiator protein DnaA
scnpilot_p_inoc_scaffold_241_134
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(143471..143737)
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Sagittula stellata E-37 RepID=A3K329_9RHOB
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobac
rpsT; SSU ribosomal protein S20P
scnpilot_p_inoc_scaffold_241_135
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143887..144663)
DNA (777bp) protein (259aa)
Short chain enoyl-CoA hydratase n=5 Tax=Rhodobacter RepID=A3PFL3_RHOS1 rbh
enoyl-CoA hydratase/isomerase
Short chain enoyl-CoA hydratase {ECO:0000313|EMBL:ACM02600.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacte
scnpilot_p_inoc_scaffold_241_136
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144736..145587)
DNA (852bp) protein (284aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=GWF1_Rhodobacteraceae_65_7_curated
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Formamidopyrimidine-DNA glycosylase id=2576223 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_241_137
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145682..146431
DNA (750bp) protein (250aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=GWF1_Rhodobacteraceae_65_7_curated
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE id=2576224 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ubiquinone/menaquinone biosynthesis methyltransferase
scnpilot_p_inoc_scaffold_241_138
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146431..147954
DNA (1524bp) protein (508aa)
2-octaprenylphenol hydroxylase id=2576225 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein Tax=GWF1_Rhodobacteraceae_65_7_curated
2-polyprenylphenol 6-hydroxylase
scnpilot_p_inoc_scaffold_241_139
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147961..149622)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W4X0_9RHOB rbh
Na+/Pi-cotransporter-like protein
Tax=BJP_IG2158_Rhodobacterales_69_12
scnpilot_p_inoc_scaffold_241_140
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149892..151316)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DC4475
Uncharacterized protein {ECO:0000313|EMBL:ERI15273.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ1
FAD linked oxidase domain-containing protein
scnpilot_p_inoc_scaffold_241_141
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151319..152218)
DNA (900bp) protein (300aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:M
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AX76_AZOBR
dihydrodipicolinate synthase (DapA)
scnpilot_p_inoc_scaffold_241_142
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152242..153543)
DNA (1302bp) protein (434aa)
TRAP transporter, DctM subunit n=1 Tax=Treponema maltophilum ATCC 51939 RepID=S3L661_TREMA rbh
TRAP dicarboxylate transporter subunit DctM Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
TRAP dicarboxylate transporter subunit DctM
scnpilot_p_inoc_scaffold_241_143
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(153547..154101)
DNA (555bp) protein (185aa)
TRAP dicarboxylate transporter protein DctQ subunit n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SXL0_RHIET
tripartite ATP-independent periplasmic transporter DctQ Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
TRAP dicarboxylate transporter protein DctQ subunit
scnpilot_p_inoc_scaffold_241_144
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154109..155134)
DNA (1026bp) protein (342aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LYS5_9PROT
TRAP dicarboxylate transporter subunit DctP Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
TRAP dicarboxylate transporter subunit DctP
scnpilot_p_inoc_scaffold_241_145
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155401..156024
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003699CE6
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABL72930.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Parac
scnpilot_p_inoc_scaffold_241_146
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156026..157144
DNA (1119bp) protein (373aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3)
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W0G8_9BRAD
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:EJN12032.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiace
scnpilot_p_inoc_scaffold_241_147
unknown

Not on your lists

157162..157266
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying items 121-147 of 147 in total

View Taxonomy