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scnpilot_p_inoc_scaffold_1024

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1024_1

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399..1076
-----------------
DNA (678bp)
protein (226aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F9N2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE18207.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1024_2
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1184..1525
-----------------
DNA (342bp)
protein (114aa)
Transcriptional regulator, ArsR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B1C5_PARDP
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFI28351.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Ha
regulatory protein ArsR
scnpilot_p_inoc_scaffold_1024_3
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1522..1995
-----------------
DNA (474bp)
protein (158aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B1C6_PARDP rbh
activator of Hsp90 ATPase 1 family protein rbh
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABL69320.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Par
scnpilot_p_inoc_scaffold_1024_4
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1995..2867
-----------------
DNA (873bp)
protein (291aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B1C7_PARDP rbh
activator of Hsp90 ATPase 1 family protein rbh
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABL69321.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Par
scnpilot_p_inoc_scaffold_1024_5
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2888..3598)
-----------------
DNA (711bp)
protein (237aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM50884.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concret
id=3014541 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
scnpilot_p_inoc_scaffold_1024_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3595..5604)
-----------------
DNA (2010bp)
protein (670aa)
von Willebrand factor type A n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TVJ5_TISMK rbh
von willebrand factor type A domain-containing protein {ECO:0000313|EMBL:EYR77598.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" sourc
ywmD; von Willebrand factor type A
scnpilot_p_inoc_scaffold_1024_7
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5686..6663)
-----------------
DNA (978bp)
protein (326aa)
AraC family transcriptional regulator id=3014620 bin=GWF1_Rhodobacteraceae_65_7 species=Nitratireductor indicus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
AraC family transcriptional regulator Tax=GWF1_Rhodobacteraceae_65_7_curated
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1024_8
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6982..7914
-----------------
DNA (933bp)
protein (311aa)
Rhodanese domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D7A2_9RHOB rbh
Rhodanese domain-containing protein {ECO:0000313|EMBL:KFE36210.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thiocla
rhodanese domain-containing protein
scnpilot_p_inoc_scaffold_1024_9
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7914..9044
-----------------
DNA (1131bp)
protein (377aa)
YeeE/YedE family protein n=1 Tax=Citreicella sp. SE45 RepID=D0D7A1_9RHOB rbh
YeeE/YedE {ECO:0000313|EMBL:KEO60392.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1024_10
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9041..9205
-----------------
DNA (165bp)
protein (55aa)
Putative uncharacterized protein n=1 Tax=Citreicella sp. SE45 RepID=D0D7A0_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEX16066.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicel
scnpilot_p_inoc_scaffold_1024_11
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9417..10820
-----------------
DNA (1404bp)
protein (468aa)
aldehyde dehydrogenase n=1 Tax=Paracoccus sp. N5 RepID=UPI0003664E4B rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KID07432.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1
aldehyde dehydrogenase rbh
scnpilot_p_inoc_scaffold_1024_12
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10887..12029
-----------------
DNA (1143bp)
protein (381aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00035CBE38
AMP-binding protein {ECO:0000313|EMBL:KID07433.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1.;"
AMP-binding enzyme
scnpilot_p_inoc_scaffold_1024_13
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12239..13132
-----------------
DNA (894bp)
protein (298aa)
tRNA 2-thiocytidine biosynthesis protein TtcA id=2683374 bin=GWF1_Rhodobacteraceae_65_7 species=Oceanicola sp. S124 genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA Tax=GWF1_Rhodobacteraceae_65_7_curated
C32 tRNA thiolase
scnpilot_p_inoc_scaffold_1024_14
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13202..14752
-----------------
DNA (1551bp)
protein (517aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S4X1_9RHOB rbh
diguanylate cyclase/phosphodiesterase Tax=CG_Rhodob_01
diguanylate cyclase/phosphodiesterase
scnpilot_p_inoc_scaffold_1024_15
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14880..16679
-----------------
DNA (1800bp)
protein (600aa)
Membrane protein insertase YidC n=1 Tax=Rhodobacter sp. SW2 RepID=C8S4X2_9RHOB rbh
putative inner membrane protein translocase component YidC; K03217 preprotein translocase subunit YidC Tax=GWF1_Rhodobacteraceae_65_7_curated
putative inner membrane protein translocase component YidC
scnpilot_p_inoc_scaffold_1024_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16676..17422
-----------------
DNA (747bp)
protein (249aa)
MOSC domain containing protein id=2775812 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sphaeroides genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
MOSC domain-containing protein; K07140 Tax=GWF1_Rhodobacteraceae_65_7_curated
MOSC domain-containing protein
scnpilot_p_inoc_scaffold_1024_17
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17419..18072
-----------------
DNA (654bp)
protein (218aa)
Probable GTP-binding protein EngB id=2775746 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein Tax=GWF1_Rhodobacteraceae_65_7_curated
GTP-binding protein
scnpilot_p_inoc_scaffold_1024_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18069..18443
-----------------
DNA (375bp)
protein (125aa)
Protein CrcB homolog id=2775743 bin=GWF1_Rhodobacteraceae_65_7 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
CrcB protein; K06199 CrcB protein Tax=GWF1_Rhodobacteraceae_65_7_curated
camphor resistance protein CrcB
scnpilot_p_inoc_scaffold_1024_19
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18440..19486
-----------------
DNA (1047bp)
protein (349aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] Tax=GWF1_Rhodobacteraceae_65_7_curated
Pseudouridine synthase id=2775740 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
RluA family pseudouridine synthase
scnpilot_p_inoc_scaffold_1024_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19486..20193
-----------------
DNA (708bp)
protein (236aa)
ATP12 ATPase id=2775737 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ATP12 ATPase Tax=GWF1_Rhodobacteraceae_65_7_curated
ATP12 ATPase
scnpilot_p_inoc_scaffold_1024_21
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20416..21432
-----------------
DNA (1017bp)
protein (339aa)
Cationic amino acid ABC transporter, periplasmic binding protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S4Y2_9RHOB rbh
bztA; glutamate/aspartate ABC transporter periplasmic glutamate/aspartate-binding protein BztA; K09969 general L-amino acid transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Rhodobac
bztA; glutamate/aspartate ABC transporter periplasmic glutamate/aspartate-binding protein BztA
scnpilot_p_inoc_scaffold_1024_22
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21550..22866
-----------------
DNA (1317bp)
protein (439aa)
Amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKN5_9RHOB rbh
bztB; glutamate/aspartate ABC transporter permease BztB; K09970 general L-amino acid transport system permease protein Tax=GWF1_Rhodobacteraceae_65_7_curated
bztB; glutamate/aspartate ABC transporter permease BztB
scnpilot_p_inoc_scaffold_1024_23
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22868..24175
-----------------
DNA (1308bp)
protein (436aa)
Amino acid ABC transporter permease n=1 Tax=Rhodobacter capsulatus B6 RepID=V8H6D9_RHOCA rbh
bztC; glutamate/aspartate ABC transporter permease BztC; K09971 general L-amino acid transport system permease protein Tax=GWF1_Rhodobacteraceae_65_7_curated
bztC; glutamate/aspartate ABC transporter permease BztC
scnpilot_p_inoc_scaffold_1024_24
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24187..24966
-----------------
DNA (780bp)
protein (260aa)
Arginine ABC transporter ATP-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKW9_9RHOB rbh
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESW61663.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" sour
ABC transporter
scnpilot_p_inoc_scaffold_1024_25
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25021..25527)
-----------------
DNA (507bp)
protein (169aa)
phosphohistidine phosphatase, SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-] Tax=GWF1_Rhodobacteraceae_65_7_curated
Phosphoglycerate mutase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKN7_9RHOB
putative phosphohistidine phosphatase SixA
scnpilot_p_inoc_scaffold_1024_26
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25524..26180)
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B49509 rbh
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
hypothetical protein rbh
scnpilot_p_inoc_scaffold_1024_27
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26248..27147)
-----------------
DNA (900bp)
protein (300aa)
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
Acetylglutamate kinase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKX5_9RHOB rbh
acetylglutamate kinase rbh
scnpilot_p_inoc_scaffold_1024_28
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27254..27985
-----------------
DNA (732bp)
protein (244aa)
Oxidoreductase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EN61_9RHOB rbh
short-chain dehydrogenase/reductase SDR Tax=GWF1_Rhodobacteraceae_65_7_curated
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_1024_29
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28444..28866)
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036705ED
hypothetical protein Tax=GWF1_Sphingomonadales_63_6_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1024_30
unknown

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comp(28863..29105)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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