ggKbase home page

scnpilot_p_inoc_scaffold_289

Search features with annotation key words

Displaying items 1-30 of 87 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_289_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..108
DNA (108bp) protein (36aa)
transposase n=1 Tax=Variovorax paradoxus RepID=UPI000375BE89
transposase, IS4 family
Transposase, IS4 family {ECO:0000313|EMBL:AGU51318.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_p_inoc_scaffold_289_2
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115..1488)
DNA (1374bp) protein (458aa)
Two-component response regulator AlgB n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZFY9_9GAMM rbh
Two-component response regulator AlgB {ECO:0000313|EMBL:EIT70617.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source
algB; two-component response regulator AlgB
scnpilot_p_inoc_scaffold_289_3
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1699..1860
DNA (162bp) protein (54aa)
membrane protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4413D
UPF0391 membrane protein N789_07995 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Ar
hypothetical protein
scnpilot_p_inoc_scaffold_289_4
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1943..2380
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HBD9_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:KFL36920.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghae
hypothetical protein
scnpilot_p_inoc_scaffold_289_5
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2392..2592
DNA (201bp) protein (67aa)
CsbD family protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1I292_PSEUO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETM65215.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (st
scnpilot_p_inoc_scaffold_289_6
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2841..5711)
DNA (2871bp) protein (957aa)
Putative TonB-dependent transporter n=1 Tax=Xanthomonas fuscans subsp. fuscans RepID=U4M725_9XANT rbh
putative TonB-dependent transporter
TonB-dependent receptor {ECO:0000313|EMBL:KGK65322.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonop
scnpilot_p_inoc_scaffold_289_7
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6041..7156)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZEI0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIT70092.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
response regulator receiver sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_289_8
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7156..9318)
DNA (2163bp) protein (721aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Signal transduction histidine kinase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458F8 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN43881.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
scnpilot_p_inoc_scaffold_289_9
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9508..10062
DNA (555bp) protein (185aa)
membrane protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B378EC
Uncharacterized protein {ECO:0000313|EMBL:KFN48084.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli
hypothetical protein
scnpilot_p_inoc_scaffold_289_10
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10122..10277
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN42643.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
scnpilot_p_inoc_scaffold_289_11
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10656..11462)
DNA (807bp) protein (269aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
UDP pyrophosphate phosphatase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B588C2 rbh
UDP pyrophosphate phosphatase
scnpilot_p_inoc_scaffold_289_12
unknown

Not on your lists

11715..12251
DNA (537bp) protein (179aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_289_13
unknown

Not on your lists

12248..13165
DNA (918bp) protein (306aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_289_14
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13170..13661
DNA (492bp) protein (164aa)
Tfp pilus assembly protein, major pilin PilA n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S724_HAHCH
Tfp pilus assembly protein, major pilin PilA
Tfp pilus assembly protein, major pilin PilA {ECO:0000313|EMBL:ABC33550.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahe
scnpilot_p_inoc_scaffold_289_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14015..15424
DNA (1410bp) protein (470aa)
glnA; glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadace
glutamine synthetase n=1 Tax=Dyella japonica RepID=UPI0003095B54
scnpilot_p_inoc_scaffold_289_16
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15916..16665
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034574E4 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR66147.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici
hypothetical protein
scnpilot_p_inoc_scaffold_289_17
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16679..17017
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=4 Tax=Delftia RepID=A9BQZ3_DELAS
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:EYR66148.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobac
scnpilot_p_inoc_scaffold_289_18
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17028..18443
DNA (1416bp) protein (472aa)
Ammonium transporter n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XAQ9_9RALS rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Fragment;; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cu
amtB; ammonium transporter
scnpilot_p_inoc_scaffold_289_19
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18543..19754)
DNA (1212bp) protein (404aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HG35_ANADF
Uncharacterized protein {ECO:0000313|EMBL:EYF00519.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondrom
SMP-30/gluconolaconase/LRE domain-containing protein
scnpilot_p_inoc_scaffold_289_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20512..21309
DNA (798bp) protein (266aa)
Precorrin-3B methylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NPH4_9GAMM rbh
precorrin-3B methylase
Precorrin-3B methylase {ECO:0000313|EMBL:AGG89546.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source
scnpilot_p_inoc_scaffold_289_21
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21302..21844
DNA (543bp) protein (181aa)
Acetyltransferase, GNAT family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q489F8_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KFN46230.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae
acetyltransferase
scnpilot_p_inoc_scaffold_289_22
Rheinheimera sp. A13L, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21880..22155
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Rheinheimera sp. A13L RepID=F7NTN1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGM78781.1}; TaxID=506534 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera sp. A13L.;
hypothetical protein
scnpilot_p_inoc_scaffold_289_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22145..23989
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D5C5B4 rbh
diguanylate cyclase (GGDEF) domain-containing protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
diguanylate cyclase
scnpilot_p_inoc_scaffold_289_24
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24053..35371
DNA (11319bp) protein (3773aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI000372F60E
Peptide synthetase {ECO:0000313|EMBL:KDN17351.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
non-ribosomal peptide synthetase
scnpilot_p_inoc_scaffold_289_25
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35428..36252
DNA (825bp) protein (275aa)
AraC family transcriptional regulator n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FDQ6_9BURK rbh
Bacillibactin transport regulator {ECO:0000313|EMBL:EWS52702.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
AraC family transcriptional regulator rbh
scnpilot_p_inoc_scaffold_289_26
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36300..37253
DNA (954bp) protein (318aa)
Putative membrane protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ISE9_BORPD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CAP43293.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (s
scnpilot_p_inoc_scaffold_289_27
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37750..38340
DNA (591bp) protein (197aa)
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFF77613.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EFF77613.1};; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
sulfate ABC transporter substrate-binding protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374BCF3 rbh
sulfate ABC transporter substrate-binding protein
scnpilot_p_inoc_scaffold_289_28
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38389..40818
DNA (2430bp) protein (810aa)
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:KCB35384.1}; EC=1.2.1.2 {ECO:0000313|EMBL:KCB35384.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alc
formate dehydrogenase, alpha subunit (EC:1.2.1.2)
Formate dehydrogenase subunit alpha n=2 Tax=Bordetella holmesii RepID=M5NM99_9BORD rbh
scnpilot_p_inoc_scaffold_289_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40828..41730
DNA (903bp) protein (301aa)
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:CCP13014.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CCP13014.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xan
formate dehydrogenase-N subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI00036D745A rbh
formate dehydrogenase subunit beta
scnpilot_p_inoc_scaffold_289_30
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41727..42395
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037409FE
Formate dehydrogenase {ECO:0000313|EMBL:KHQ93100.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
formate dehydrogenase
Displaying items 1-30 of 87 in total

View Taxonomy