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SCNpilot_P_inoc_Rhizobiales_67_4_fragment_2

SCNpilot_P_inoc_Rhizobiales_67_4
In projects: SCNpilot_P_inoc

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.15 Longest contig: 15.38 Kbp Bin length: 1.36 Mbp GC content: 67.16 %
Contigs count: 236 Features count: 1512 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 1 BSCG 35 / 51 MC: 1 ASCG 4 / 38
Displaying items 1-50 of 236 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1960
Class: Alphaproteobacteria (52.63%)
19 15381 bp 67.95 4.32 91.89
scnpilot_p_inoc_scaffold_2476
Order: Rhizobiales (66.67%)
18 12609 bp 66.41 4.14 90.72
scnpilot_p_inoc_scaffold_4618
Class: Alphaproteobacteria (56.25%)
16 8011 bp 61.18 3.20 86.39
scnpilot_p_inoc_scaffold_5829
Order: Rhizobiales (66.67%)
15 12184 bp 67.92 4.43 88.67
scnpilot_p_inoc_scaffold_7913
Order: Rhizobiales (80%)
15 5998 bp 64.87 4.30 95.98
scnpilot_p_inoc_scaffold_2581
Order: Rhizobiales (64.29%)
14 12186 bp 67.28 4.32 88.77
scnpilot_p_inoc_scaffold_3876
Class: Alphaproteobacteria (57.14%)
14 9213 bp 67.08 4.51 86.65
scnpilot_p_inoc_scaffold_4070
Order: Rhizobiales (53.85%)
13 8694 bp 68.23 4.30 94.89
scnpilot_p_inoc_scaffold_7238
Order: Rhizobiales (76.92%)
13 10753 bp 66.25 4.42 79.29
scnpilot_p_inoc_scaffold_3057
Class: Alphaproteobacteria (75%)
12 10619 bp 66.74 4.68 80.83
scnpilot_p_inoc_scaffold_5236
Order: Rhizobiales (72.73%)
11 10323 bp 67.05 4.88 89.25
scnpilot_p_inoc_scaffold_5522
Order: Rhizobiales (63.64%)
11 7107 bp 67.67 4.94 88.35
scnpilot_p_inoc_scaffold_7158
Order: Rhizobiales (72.73%)
11 5932 bp 67.68 4.48 86.08
scnpilot_p_inoc_scaffold_4407
Order: Rhizobiales (80%)
10 8281 bp 66.62 4.26 92.20
scnpilot_p_inoc_scaffold_7790
Species: Rhizobium sp. PDO1-076 (50%)
10 7661 bp 64.76 3.66 92.81
scnpilot_p_inoc_scaffold_4183
Order: Rhizobiales (80%)
10 8536 bp 69.32 4.45 90.18
scnpilot_p_inoc_scaffold_12550
Order: Rhizobiales (60%)
10 6180 bp 69.09 3.83 94.17
scnpilot_p_inoc_scaffold_3719
Species: Mesorhizobium ciceri (50%)
10 9251 bp 68.30 4.09 98.65
scnpilot_p_inoc_scaffold_8700
Class: Alphaproteobacteria (60%)
10 5173 bp 68.72 4.70 85.42
scnpilot_p_inoc_scaffold_3985
Order: Rhizobiales (77.78%)
9 8823 bp 69.27 4.62 91.13
scnpilot_p_inoc_scaffold_6841
Phylum: Proteobacteria (77.78%)
9 6110 bp 62.42 4.15 85.68
scnpilot_p_inoc_scaffold_9028
Order: Rhizobiales (77.78%)
9 5049 bp 67.00 4.16 85.15
scnpilot_p_inoc_scaffold_3501
Genus: Devosia (55.56%)
9 9668 bp 65.03 4.45 96.75
scnpilot_p_inoc_scaffold_8033
Order: Rhizobiales (66.67%)
9 7921 bp 67.77 3.58 87.75
scnpilot_p_inoc_scaffold_6670
Order: Rhizobiales (77.78%)
9 6228 bp 69.17 4.05 92.68
scnpilot_p_inoc_scaffold_5559
Order: Rhizobiales (55.56%)
9 7078 bp 67.43 4.20 92.48
scnpilot_p_inoc_scaffold_4266
Order: Rhizobiales (55.56%)
9 8444 bp 69.33 4.49 94.33
scnpilot_p_inoc_scaffold_4015
Order: Rhizobiales (77.78%)
9 8780 bp 63.85 3.98 83.99
scnpilot_p_inoc_scaffold_4805
Class: Alphaproteobacteria (66.67%)
9 7816 bp 66.11 4.18 89.32
scnpilot_p_inoc_scaffold_6735
Class: Alphaproteobacteria (77.78%)
9 6192 bp 65.34 4.48 91.28
scnpilot_p_inoc_scaffold_4866
Order: Rhizobiales (66.67%)
9 7732 bp 69.53 3.53 90.87
scnpilot_p_inoc_scaffold_5658 9 6986 bp 61.28 3.03 97.01
scnpilot_p_inoc_scaffold_3948
Genus: Rhizobium (77.78%)
9 9239 bp 66.23 3.65 97.09
scnpilot_p_inoc_scaffold_6023
Order: Rhizobiales (77.78%)
9 9075 bp 68.07 4.23 89.69
scnpilot_p_inoc_scaffold_11261
Class: Alphaproteobacteria (88.89%)
9 4310 bp 65.94 4.32 92.92
scnpilot_p_inoc_scaffold_11295
Order: Rhizobiales (50%)
8 4301 bp 67.61 4.53 85.38
scnpilot_p_inoc_scaffold_6328
Order: Rhizobiales (62.5%)
8 6443 bp 65.82 5.19 85.77
scnpilot_p_inoc_scaffold_8995
Order: Rhizobiales (62.5%)
8 5472 bp 68.79 4.25 89.25
scnpilot_p_inoc_scaffold_6864
Order: Rhizobiales (75%)
8 6097 bp 67.10 4.11 95.36
scnpilot_p_inoc_scaffold_4945
Order: Rhizobiales (62.5%)
8 7657 bp 68.98 4.33 93.13
scnpilot_p_inoc_scaffold_7294
Class: Alphaproteobacteria (75%)
8 8960 bp 66.93 4.20 92.51
scnpilot_p_inoc_scaffold_7555
Class: Alphaproteobacteria (87.5%)
8 5723 bp 68.09 4.85 93.83
scnpilot_p_inoc_scaffold_7068
Order: Rhizobiales (62.5%)
8 5987 bp 66.61 4.21 83.43
scnpilot_p_inoc_scaffold_6390
Class: Alphaproteobacteria (75%)
8 6407 bp 71.69 4.17 96.69
scnpilot_p_inoc_scaffold_9863
Order: Rhizobiales (50%)
8 4750 bp 66.25 5.05 85.07
scnpilot_p_inoc_scaffold_6400
Class: Alphaproteobacteria (75%)
8 6401 bp 68.46 4.59 91.81
scnpilot_p_inoc_scaffold_6938
Order: Rhizobiales (87.5%)
8 6051 bp 68.02 3.69 91.62
scnpilot_p_inoc_scaffold_12462
Order: Rhizobiales (50%)
8 5770 bp 68.89 4.26 86.26
scnpilot_p_inoc_scaffold_7385
Class: Alphaproteobacteria (62.5%)
8 5813 bp 65.04 2.99 67.87
scnpilot_p_inoc_scaffold_9927
Order: Rhizobiales (50%)
8 4727 bp 65.75 4.82 85.04
Displaying items 1-50 of 236 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.