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SCNpilot_P_inoc_Thiobacillus_63_16_multi

SCNpilot_P_inoc_Hydrogenophilales_63_16
In projects: SCNpilot_P_inoc

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 16.27 Longest contig: 51.87 Kbp Bin length: 2.06 Mbp GC content: 62.82 %
Contigs count: 258 Features count: 2206 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 1 BSCG 35 / 51 ASCG 9 / 38 MC: 2

Description

fragmented, some high-coverage core genes included.

Displaying items 51-100 of 258 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_7656
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 5670 bp 61.38 23.57 86.98
scnpilot_p_inoc_scaffold_7756
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 5625 bp 64.46 30.43 87.15
scnpilot_p_inoc_scaffold_11764
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 4177 bp 62.37 65.72 87.26
scnpilot_p_inoc_scaffold_3445
Order: Hydrogenophilales (50%)
12 9780 bp 59.07 7.02 87.30
scnpilot_p_inoc_scaffold_5677
Order: Hydrogenophilales (100%)
7 6967 bp 62.18 13.46 87.50
scnpilot_p_inoc_scaffold_11032
Order: Hydrogenophilales (87.5%)
8 4376 bp 65.27 9.91 87.61
scnpilot_p_inoc_scaffold_1198
Species: Acidovorax sp. JS42 (66.67%)
27 25180 bp 65.71 13.67 87.74
scnpilot_p_inoc_scaffold_4991
Phylum: Proteobacteria (85.71%)
7 7611 bp 64.46 10.60 88.06
scnpilot_p_inoc_scaffold_4544
Class: Betaproteobacteria (77.78%)
9 8116 bp 62.90 8.89 88.31
scnpilot_p_inoc_scaffold_7679
Species: Thiobacillus denitrificans (55.56%)
9 5661 bp 63.29 36.80 88.34
scnpilot_p_inoc_scaffold_9924
Order: Hydrogenophilales (60%)
5 4728 bp 62.69 7.61 88.58
scnpilot_p_inoc_scaffold_25454 3 4025 bp 65.22 64.25 88.62
scnpilot_p_inoc_scaffold_10528
Class: Betaproteobacteria (50%)
4 4528 bp 66.10 27.99 88.71
scnpilot_p_inoc_scaffold_5891
Order: Hydrogenophilales (85.71%)
7 6785 bp 63.52 7.76 88.74
scnpilot_p_inoc_scaffold_9842
Order: Hydrogenophilales (100%)
5 4759 bp 64.61 14.59 88.76
scnpilot_p_inoc_scaffold_2087
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
16 14547 bp 62.43 12.56 88.78
scnpilot_p_inoc_scaffold_1072
Order: Hydrogenophilales (50%)
32 34451 bp 59.60 11.45 88.82
scnpilot_p_inoc_scaffold_11179
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 4332 bp 64.06 15.72 88.85
scnpilot_p_inoc_scaffold_10733
Species: Thiobacillus denitrificans (50%)
4 4460 bp 64.04 12.81 88.86
scnpilot_p_inoc_scaffold_3748
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 9193 bp 61.06 16.81 88.93
scnpilot_p_inoc_scaffold_4657
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
10 7965 bp 61.41 13.58 88.93
scnpilot_p_inoc_scaffold_10068
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 4677 bp 60.32 8.66 88.97
scnpilot_p_inoc_scaffold_6214
Order: Hydrogenophilales (83.33%)
6 6537 bp 62.96 9.43 89.08
scnpilot_p_inoc_scaffold_10369
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (81.82%)
11 8828 bp 63.03 23.35 89.14
scnpilot_p_inoc_scaffold_1294
Class: Betaproteobacteria (54.55%)
22 23286 bp 57.58 9.55 89.17
scnpilot_p_inoc_scaffold_7988
Class: Betaproteobacteria (85.71%)
7 5497 bp 58.27 5.98 89.39
scnpilot_p_inoc_scaffold_1012
Class: Betaproteobacteria (75.56%)
45 51866 bp 63.91 22.78 89.45
scnpilot_p_inoc_scaffold_24683
Species: Thiobacillus denitrificans (100%)
5 4086 bp 60.96 7.89 89.57
scnpilot_p_inoc_scaffold_2156
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
12 14063 bp 64.24 8.81 89.60
scnpilot_p_inoc_scaffold_7730
Class: Betaproteobacteria (85.71%)
7 5641 bp 56.21 5.69 89.88
scnpilot_p_inoc_scaffold_7916
Order: Hydrogenophilales (100%)
7 5542 bp 61.76 39.03 89.91
scnpilot_p_inoc_scaffold_1798
Order: Hydrogenophilales (93.75%)
16 16580 bp 62.12 9.41 90.02
scnpilot_p_inoc_scaffold_9588
Order: Hydrogenophilales (71.43%)
7 4838 bp 58.62 10.91 90.29
scnpilot_p_inoc_scaffold_1833
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
14 16281 bp 62.24 30.03 90.38
scnpilot_p_inoc_scaffold_1955
Order: Hydrogenophilales (90%)
20 15696 bp 61.06 9.71 90.41
scnpilot_p_inoc_scaffold_3956
Order: Hydrogenophilales (100%)
9 8863 bp 62.43 19.51 90.41
scnpilot_p_inoc_scaffold_7279
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 5865 bp 62.27 34.42 90.54
scnpilot_p_inoc_scaffold_8403
Order: Burkholderiales (50%)
4 5297 bp 56.52 15.86 90.56
scnpilot_p_inoc_scaffold_8568
Order: Hydrogenophilales (66.67%)
6 5226 bp 63.62 9.90 90.59
scnpilot_p_inoc_scaffold_9072
Order: Hydrogenophilales (100%)
3 5028 bp 66.09 11.01 90.75
scnpilot_p_inoc_scaffold_7411
Order: Hydrogenophilales (100%)
9 5797 bp 63.48 18.55 90.82
scnpilot_p_inoc_scaffold_8855
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 5116 bp 65.27 10.03 90.83
scnpilot_p_inoc_scaffold_10592
Order: Burkholderiales (50%)
6 4506 bp 64.78 8.59 90.95
scnpilot_p_inoc_scaffold_7037
Order: Hydrogenophilales (85.71%)
7 6001 bp 62.94 92.91 90.98
scnpilot_p_inoc_scaffold_12381
Order: Burkholderiales (60%)
5 4029 bp 55.27 8.53 91.06
scnpilot_p_inoc_scaffold_10629
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 4498 bp 61.89 33.45 91.11
scnpilot_p_inoc_scaffold_1859
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
14 16096 bp 64.40 14.35 91.23
scnpilot_p_inoc_scaffold_11665
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 4199 bp 61.13 7.57 91.24
scnpilot_p_inoc_scaffold_11188
Class: Betaproteobacteria (100%)
5 4330 bp 66.93 10.25 91.32
scnpilot_p_inoc_scaffold_2616
Order: Rhodocyclales (60%)
10 12066 bp 61.99 19.16 91.32
Displaying items 51-100 of 258 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.