ggKbase home page

scnpilot_p_inoc_scaffold_56

Search features with annotation key words

Displaying items 271-300 of 419 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_56_271
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(296646..298889)
DNA (2244bp) protein (748aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=1162282 species="Ba
DNA topoisomerase IV subunit A (EC:5.99.1.-)
DNA topoisomerase 4 subunit A n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW7_9GAMM rbh
scnpilot_p_inoc_scaffold_56_272
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(298946..299818)
DNA (873bp) protein (291aa)
GumN family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW6_9GAMM
Polysaccharide biosynthesis protein GumN {ECO:0000313|EMBL:KGI77832.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source
polysaccharide biosynthesis protein GumN
scnpilot_p_inoc_scaffold_56_273
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

299991..300767
DNA (777bp) protein (259aa)
Protein serine/threonine phosphatase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLT4_9GAMM
protein serine/threonine phosphatase
Protein serine/threonine phosphatase {ECO:0000313|EMBL:AEM49246.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;"
scnpilot_p_inoc_scaffold_56_274
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

300918..301568
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368A5EC
Uncharacterized protein {ECO:0000313|EMBL:KGM55243.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeon
hypothetical protein
scnpilot_p_inoc_scaffold_56_275
unknown

Not on your lists

301691..302056
DNA (366bp) protein (122aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_56_276
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

302268..302969
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003829158
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC83602.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
scnpilot_p_inoc_scaffold_56_277
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

303035..303760
DNA (726bp) protein (242aa)
RNA polymerase subunit sigma-24 n=1 Tax=Schlesneria paludicola RepID=UPI00029A77F8
Uncharacterized protein {ECO:0000313|EMBL:AKC86166.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
hypothetical protein
scnpilot_p_inoc_scaffold_56_278
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

303763..308145
DNA (4383bp) protein (1461aa)
serine/threonine protein kinase-related protein n=1 Tax=Schlesneria paludicola RepID=UPI00029ADE30 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN50767.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
WD40 repeat-containing protein
scnpilot_p_inoc_scaffold_56_279
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

308159..311041
DNA (2883bp) protein (961aa)
Putative TonB-dependent transporter n=1 Tax=Xanthomonas fuscans subsp. fuscans RepID=U4M725_9XANT
putative TonB-dependent transporter
Putative TonB-dependent transporter {ECO:0000313|EMBL:CDF61158.1}; TaxID=366649 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xantho
scnpilot_p_inoc_scaffold_56_280
unknown

Not on your lists

311541..311903
DNA (363bp) protein (121aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_56_281
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(311958..313124)
DNA (1167bp) protein (389aa)
Cyclopropane fatty acyl phospholipid synthase {ECO:0000313|EMBL:EIL96606.1}; EC=2.1.1.79 {ECO:0000313|EMBL:EIL96606.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
Cyclopropane fatty acyl phospholipid synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAW5_9GAMM rbh
methyltransferase, cyclopropane fatty acid synthase
scnpilot_p_inoc_scaffold_56_282
RLO_PLX_64_10, Bacteria

Not on your lists

comp(313124..314320)
DNA (1197bp) protein (399aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D313_METSW rbh
Major Facilitator Superfamily Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_56_283
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(314317..314661)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D31B9
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
uncharacterized protein
scnpilot_p_inoc_scaffold_56_284
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(314658..315050)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B680F
camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dye
scnpilot_p_inoc_scaffold_56_285
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(315207..315716)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1CFI6_9ZZZZ
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
hypothetical protein
scnpilot_p_inoc_scaffold_56_286
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(315809..316084)
DNA (276bp) protein (92aa)
cell division topological specificity factor n=1 Tax=Dyella japonica RepID=UPI0002DAAB5A
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xa
cell division topological specificity factor
scnpilot_p_inoc_scaffold_56_287
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316096..316908)
DNA (813bp) protein (271aa)
Site-determining protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAV8_9GAMM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
cell division inhibitor MinD
scnpilot_p_inoc_scaffold_56_288
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316999..317793)
DNA (795bp) protein (265aa)
septation inhibitor protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345E519
septum site-determining protein MinC
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;
scnpilot_p_inoc_scaffold_56_289
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317790..318407)
DNA (618bp) protein (206aa)
GCN5 family acetyltransferase n=1 Tax=Dyella japonica RepID=UPI0003198731
GCN5 family acetyltransferase {ECO:0000313|EMBL:GAN45795.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugak
GCN5 family acetyltransferase
scnpilot_p_inoc_scaffold_56_290
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318622..319863
DNA (1242bp) protein (414aa)
Two-component system sensor protein n=1 Tax=mine drainage metagenome RepID=T1B3I8_9ZZZZ
Histidine kinase {ECO:0000313|EMBL:GAN45794.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sedi
signal transduction histidine kinase
scnpilot_p_inoc_scaffold_56_291
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

319943..320584
DNA (642bp) protein (214aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter sp. 115 RepID=I4W750_9GAMM rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:GAN45793.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source=
LuxR family transcriptional regulator
scnpilot_p_inoc_scaffold_56_292
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

320852..322231
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A65DF rbh
Polyketide cyclase {ECO:0000313|EMBL:GAN45792.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="
polyketide cyclase
scnpilot_p_inoc_scaffold_56_293
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

322501..323439
DNA (939bp) protein (313aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034ADDBA
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:EIM03013.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodan
ABC-type multidrug transport system, ATPase component
scnpilot_p_inoc_scaffold_56_294
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

323695..324468
DNA (774bp) protein (258aa)
ABC transporter permease n=1 Tax=Rudaea cellulosilytica RepID=UPI000361B6CE
ABC transporter permease
Putative ABC transporter, permease protein {ECO:0000313|EMBL:AAU92171.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" sourc
scnpilot_p_inoc_scaffold_56_295
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

324465..326276
DNA (1812bp) protein (604aa)
ABC transporter involved in gliding motility, auxiliary component n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU73_9GAMM
ABC transporter involved in gliding motility, auxiliary component {ECO:0000313|EMBL:EIM03015.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component
scnpilot_p_inoc_scaffold_56_296

Not on your lists

326273..326680
DNA (408bp) protein (136aa)
Membrane protein containing DUF423 n=2 Tax=mine drainage metagenome RepID=T0YE73_9ZZZZ
Membrane protein containing DUF423 {ECO:0000313|EMBL:EQD33671.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_56_297
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

326691..327377
DNA (687bp) protein (229aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL36424.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghae
DNA-3-methyladenine glycosylase id=2901429 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
mpg; DNA-3-methyladenine glycosylase
scnpilot_p_inoc_scaffold_56_298
unknown

Not on your lists

comp(327511..327861)
DNA (351bp) protein (117aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_56_299

Not on your lists

comp(328360..328947)
DNA (588bp) protein (196aa)
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins domain protein {ECO:0000313|EMBL:EQD76728.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EQD76728.1};; Flags: Fragment;; TaxID=410659 species="unclassi
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003668525
hypothetical protein
scnpilot_p_inoc_scaffold_56_300
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(329022..329513)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T1V7_XANCT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGO98480.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvi
Displaying items 271-300 of 419 in total

View Taxonomy