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scnpilot_p_inoc_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 419 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_56_1
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..1899
DNA (1899bp) protein (633aa)
Carbohydrate binding family 6 n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GDL6_METPE
Cell surface protein {ECO:0000313|EMBL:AKB80284.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horo
cell surface protein
scnpilot_p_inoc_scaffold_56_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2224..3990
DNA (1767bp) protein (589aa)
Sodium/hydrogen exchanger n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK5_9GAMM
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EIM01397.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
Kef-type K+ transport system, predicted NAD-binding component
scnpilot_p_inoc_scaffold_56_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4004..4804)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVP7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91288.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
scnpilot_p_inoc_scaffold_56_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4910..6742)
DNA (1833bp) protein (611aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3Q2_NITHN
Uncharacterized protein {ECO:0000313|EMBL:AKC87885.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
hypothetical protein
scnpilot_p_inoc_scaffold_56_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6826..7563)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000378A49B
Uncharacterized protein {ECO:0000313|EMBL:KGI78716.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas s
surfeit locus 1 family protein (Surf1-like)
scnpilot_p_inoc_scaffold_56_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7586..7987)
DNA (402bp) protein (134aa)
Cytochrome o ubiquinol oxidase subunit IV n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK0_9GAMM
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:EIL87391.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
Cytochrome O ubiquinol oxidase subunit IV
scnpilot_p_inoc_scaffold_56_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7984..8610)
DNA (627bp) protein (209aa)
cyoC; cytochrome O ubiquinol oxidase subunit III (EC:1.10.3.-)
Cytochrome ubiquinol oxidase subunit III n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK1_9GAMM rbh
Cytochrome ubiquinol oxidase subunit III {ECO:0000313|EMBL:EIL87392.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source
scnpilot_p_inoc_scaffold_56_8
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8607..10637)
DNA (2031bp) protein (677aa)
cyoB; cytochrome O ubiquinol oxidase, subunit I (EC:1.10.3.-)
cytochrome O ubiquinol oxidase n=1 Tax=Arhodomonas aquaeolei RepID=UPI000367272F
Cytochrome o ubiquinol oxidase subunit I 2 {ECO:0000313|EMBL:EIT67974.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" s
scnpilot_p_inoc_scaffold_56_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10661..11656)
DNA (996bp) protein (332aa)
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK4_9GAMM rbh
Cytochrome o ubiquinol oxidase subunit II {ECO:0000313|EMBL:EIL87395.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
cyoA; ubiquinol oxidase subunit II
scnpilot_p_inoc_scaffold_56_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11876..13207
DNA (1332bp) protein (444aa)
General substrate transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJK5_9GAMM
Arabinose ABC transporter permease {ECO:0000313|EMBL:KGI78499.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Olei
transporter protein
scnpilot_p_inoc_scaffold_56_11

Not on your lists

13990..14835
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346CE8F rbh
Sulfotransferase {ECO:0000313|EMBL:EQD26513.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sulfotransferase
scnpilot_p_inoc_scaffold_56_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15027..15518)
DNA (492bp) protein (164aa)
SsrA-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH2_9GAMM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanoba
scnpilot_p_inoc_scaffold_56_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15708..16220
DNA (513bp) protein (171aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T9_9GAMM
Oligoketide cyclase {ECO:0000313|EMBL:KGI78196.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.
oligoketide cyclase/lipid transport protein
scnpilot_p_inoc_scaffold_56_14
Yersinia ruckeri, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16213..16500
DNA (288bp) protein (96aa)
UPF0125 protein ROD_25671 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TUP1_CITRI
rnfH Ubiquitin family protein
UPF0125 protein BD65_1100 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=29486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia ruc
scnpilot_p_inoc_scaffold_56_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16721..17179)
DNA (459bp) protein (153aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN8_9GAMM
membrane protein SmpA
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
scnpilot_p_inoc_scaffold_56_16
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17259..17663
DNA (405bp) protein (135aa)
Fur family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F294
Fur family transcriptional regulator {ECO:0000313|EMBL:KFN49985.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Areni
Fur family transcriptional regulator
scnpilot_p_inoc_scaffold_56_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17724..19529
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003636E9C
Uncharacterized protein {ECO:0000313|EMBL:EIL92446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_56_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19695..21371)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM rbh
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria
scnpilot_p_inoc_scaffold_56_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21543..22586
DNA (1044bp) protein (348aa)
HrcA family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI00031B8E66
HrcA family transcriptional regulator
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xan
scnpilot_p_inoc_scaffold_56_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22795..23340
DNA (546bp) protein (182aa)
Protein GrpE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI84_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria;
molecular chaperone GrpE (heat shock protein)
scnpilot_p_inoc_scaffold_56_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23432..25369
DNA (1938bp) protein (646aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ8_9GAMM rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
chaperone protein DnaK
scnpilot_p_inoc_scaffold_56_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25528..26148
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E7DEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13390.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_p_inoc_scaffold_56_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26145..27260
DNA (1116bp) protein (372aa)
molecular chaperone DnaJ n=1 Tax=Dyella ginsengisoli RepID=UPI00034C5615
molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella
scnpilot_p_inoc_scaffold_56_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27467..28201
DNA (735bp) protein (245aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTX6_9GAMM
dihydrodipicolinate reductase
scnpilot_p_inoc_scaffold_56_25
RAAC39, RAAC39, RAAC39, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(28256..28735)
DNA (480bp) protein (160aa)
seg id=721304 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
seg id=721304 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
scnpilot_p_inoc_scaffold_56_26
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28753..29982)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003745C86
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
scnpilot_p_inoc_scaffold_56_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30159..31208)
DNA (1050bp) protein (350aa)
Alpha/beta hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNR1_9GAMM
Alpha/beta hydrolase {ECO:0000313|EMBL:EIL88852.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulv
alpha/beta hydrolase fold protein
scnpilot_p_inoc_scaffold_56_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31463..32476)
DNA (1014bp) protein (338aa)
Cytochrome C binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWF5_9GAMM rbh
Cytochrome C binding protein {ECO:0000313|EMBL:EIL91546.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
cytochrome c class I
scnpilot_p_inoc_scaffold_56_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32560..33339)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348D2F2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX14744.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_p_inoc_scaffold_56_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33600..34295)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034AAA6B rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88947.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
Displaying items 1-30 of 419 in total

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